Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1336 116 1e-20 seq1314 109 2e-18 seq1008 105 2e-17 >seq1336 Length=25880 Score = 116 bits (128), Expect = 1e-20 Identities = 349/534 (65%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | ||||| ||||| || || || | ||| || | ||| | || || Sbjct 5481 TCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGT 5540 Query 156030 TCCAGATACATAGCAAAA-CTACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCA 156086 || || || ||||||||| | || || | | | ||||| ||||| || || || || Sbjct 5541 TCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCG 5600 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || |||||||| | || ||| || | || ||||| || ||||||||||| ||| | Sbjct 5601 GTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCA 5660 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TT 156205 || | || || | | || | | ||| | || || ||||| || || | |||| || Sbjct 5661 ATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCAG-CCATCTT 5719 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| ||| ||| || | || | |||| || |||||| |||||||| ||| Sbjct 5720 GGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCAT 5779 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | | |||| ||| | ||||| | || |||||||| ||||| |||||||| Sbjct 5780 GTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGG 5839 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | ||||| | || || || ||||| | ||| ||||| | ||||||| Sbjct 5840 GGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAAC 5899 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 || || ||||| | | || | ||| ||| |||||||| | ||| ||||| Sbjct 5900 ATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACAAT 5959 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||||| || |||||| || | || |||||||| || || ||||| || Sbjct 5960 CTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTA 6013 >seq1314 Length=81020 Score = 109 bits (120), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| | |||||| ||| |||| || || | || | || || |||| ||| | Sbjct 75975 ACAAATATGGACTCTGAAAGCGTCGGAAACTTCGAACAGTCGTTCCTTTAGGAAAGCTGC 76034 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 76035 AGCACCATGAGCAATCATGCAATCACGTTCCATTTCTCCGAAACGAAGACCACCATCACG 76094 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA--GGACCGATGGAGCGGCTA 251601 ||| | ||| ||| ||||||| ||||| || | | || || || || || | Sbjct 76095 AGCACGACCTTCGACAGGCTGCCGAGT--CATGATCTGTACCGGGCCACGGGCACGAGCA 76152 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || ||| |||| |||||||| || ||||||||| ||| ||| |||| ||| Sbjct 76153 TGGATCTTGTCATCCACCATATGTCGAAGTCGCTGGTAGTATGTGGGCCCGAAGAA 76208 >seq1008 Length=41606 Score = 105 bits (116), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGA---CAAGCGTGCGAGTTTTGCTACT 133507 ||||| ||||||||||| | || ||||| || ||| | ||| |||||| Sbjct 1910 AAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAA---TTCGACTTTTGCCCAA 1966 Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||| ||||||| |||| || || || || || ||||| ||||| ||| |||||| Sbjct 1967 CGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCCTCTATC 2026 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||||||| | | || || ||| || |||||||| || || || Sbjct 2027 TTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTCATCTCG 2086 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| | || |||||||| |||||| Sbjct 2087 CGTGACGAAGGTCTCCACACCGACTTTGCC 2116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471784429370783