Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1579 114 2e-19 seq1336 109 7e-18 seq1273 107 2e-17 seq518 98.7 1e-14 seq1008 95.1 1e-13 >seq1579 Length=18436 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| || || ||||||||||| |||||| |||| ||||| | || || ||||||| Sbjct 10156 CCAACTATCTTGATATCAAGCCTCTTCTCGATGTTGGCTGCAAAACCGTTGCAAACATGA 10215 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 |||||||||| || |||||||||||||| ||||| || ||||| Sbjct 10216 TCAAGGGCAAATCCCCCGAGGAGATCCGGAAGACTTTCAACAT 10258 >seq1336 Length=25880 Score = 109 bits (120), Expect = 7e-18 Identities = 209/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||||||||| || |||| ||| |||||||| | |||||| |||| ||| || ||| Sbjct 5583 TGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGAC 5642 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| ||||| || || | ||| | ||| | ||| || | || | | ||| Sbjct 5643 GTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCA 5702 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| ||| |||||| || | || || ||| || ||||| || |||||||| Sbjct 5703 ATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCA 5762 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || | |||||||| || | ||||| || || | || || |||| || || Sbjct 5763 ATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCA 5822 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || ||||| || || || | || |||||| | | | |||||| || |||||| Sbjct 5823 GCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTC 5882 Query 1630366 GCGAGCAC 1630373 |||| || Sbjct 5883 TCGAGGAC 5890 >seq1273 Length=28106 Score = 107 bits (118), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063 ||| |||||||||||||||| | |||||| | || |||| || ||| ||| Sbjct 6519 GGCATCGACGTCGTGCGCAACAGGATCAAGGGCTTTGCGCAAAAGAAAGTCACCCTCCCG 6578 Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123 || || ||||||||| | | ||||||||||| |||||| || | ||||| | || ||| Sbjct 6579 CCGGGCCGCCACAAGCTAGTAATCCTCGACGAAGCCGACAGCATGACGTCAGGTGCGCAG 6638 Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183 || |||||||| ||| ||||| | || | || ||||| ||||| || | || || Sbjct 6639 CAAGCCCTGCGCCGCACGATGGAGATTTACTCGAATACGACTCGCTTCGCTTTCGCCTGT 6698 Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236 ||| |||| | | | |||||| || | | |||||| |||||||| || || Sbjct 6699 AACCAGTCGAACAAGATTATCGAG--CCGCTACAGTCGCGATGCGCCATCCTACG 6751 >seq518 Length=5935 Score = 98.7 bits (108), Expect = 1e-14 Identities = 143/198 (72%), Gaps = 18/198 (9%) Strand=Plus/Minus Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACC-----CAC-TCGGG 1572441 ||| ||||||||| ||||||| || | |||||||| | ||||| ||| ||||| Sbjct 585 GCCGAAGCCGCCGGCGCCGCGCACGCTCGCGTCCAGCTCGGCGACCTCGACCACGTCGGG 526 Query 1572442 CTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAA- 1572500 | | || | || || |||| || ||| |||||||| ||||||| | | | Sbjct 525 C--GTGTAG----ATGCGCTCAATGACCAGCTGCGCGATGCGG---TCGCCCTCGGCGAT 475 Query 1572501 --CGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGC 1572558 ||| |||||||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct 474 GGCGTAGTCGGCGTCGCCGTGGTTGAAGAGCAGGATCTTCACCTGCCCGCGGTAGTCGGC 415 Query 1572559 ATCGATGACGCCTGCGCC 1572576 ||||||||||| ||||| Sbjct 414 GTCGATGACGCCCGCGCC 397 >seq1008 Length=41606 Score = 95.1 bits (104), Expect = 1e-13 Identities = 169/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| ||||| ||||| |||||||| ||||||| || Sbjct 2412 GCCTTCTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATG 2353 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||||||||||| | |||| ||| || || ||||| Sbjct 2352 TTCTCCATGAAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGCCCAAAGCGA-- 2295 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | ||||| || ||||| || ||||| |||||||| ||||||| || ||||| |||| Sbjct 2294 CAAGCAGACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGA 2235 Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 || ||| | || || | ||| ||| || |||| ||||||| ||||| ||||| Sbjct 2234 GCAGACCGCAA--GGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGAC 2177 Query 868927 GAT 868929 ||| Sbjct 2176 GAT 2174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106994848222603