Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1336 140 3e-28 seq1413 134 1e-26 seq1001 104 2e-17 >seq1336 Length=25880 Score = 140 bits (154), Expect = 3e-28 Identities = 708/1116 (63%), Gaps = 42/1116 (4%) Strand=Plus/Plus Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 ||| || ||||||||||| || || |||||| ||||||||| ||| | ||||| || Sbjct 4535 GACTTGGAATTCACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAA 4594 Query 138567 CGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAG 138626 ||||||| || ||||||||||| | || | |||||||||||| |||| | || Sbjct 4595 GCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAG 4654 Query 138627 AGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 | || |||| ||| || | ||||| | |||||||| | | ||||||||| | ||| Sbjct 4655 ACTGTTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATC 4714 Query 138687 GCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTC 138746 || | |||||||| || ||||| | || || | | ||| ||| || Sbjct 4715 AGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTC 4774 Query 138747 GTACGAATCGTATACACCAAACTCTTGCGCCAACT-CGTTGCTCGCCTCGAGCGCACCAT 138805 ||| | | ||| ||| || | || | || | ||| | || | || ||| Sbjct 4775 GTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTCCATTGAT-GCAGTCAAAGCGGCAT 4833 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC-GGCGCTCTCGTACGGC 138864 ||| || || || |||||||| |||||| ||| || || |||| | || | ||| Sbjct 4834 GGTACATGGTCTCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGAT-TCAAAAGGC 4892 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924 |||||||| ||| | ||||| || || || || || | || | |||||| ||| Sbjct 4893 ATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGG 4952 Query 138925 CGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTT 138980 |||| || ||| || || || || || |||||| | |||| | ||||||| | | Sbjct 4953 CGCA----TGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCT 5008 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCC 139040 ||| | ||| ||||| || || | || | | | || |||||| || | | Sbjct 5009 GTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATAGCTTTC 5068 Query 139041 CCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACAC 139100 | ||| | ||| |||| | ||| || | | || || || | |||||| || Sbjct 5069 CGAGTTATAGTCCACGAAG--GAC-----GGT--AAAGCCATGGATGCCAAGTTGCAAAC 5119 Query 139101 CGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGAT 139160 || ||||| || || | ||||| || | || || | || | |||| || || Sbjct 5120 AGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAAT 5179 Query 139161 CGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220 ||||| | || | || ||||| || || || || ||||| ||||| | || Sbjct 5180 TGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGG 5239 Query 139221 TGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA---T 139277 | ||||| || || | ||||| |||| | | | | | |||| || | Sbjct 5240 GTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAGCTTCTGGGCTTTTATCGT 5299 Query 139278 TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACC 139337 || || || | | || || ||||| |||||||| | || || ||||| Sbjct 5300 CTGGCGGCCG---CGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACC 5356 Query 139338 GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGC 139397 |||| | || | |||| | ||||| || || ||||| || | ||| ||||||| Sbjct 5357 GTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTT 5416 Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC--- 139454 || || || ||||||||||||| |||||||| | || | | | || || || Sbjct 5417 CTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACG 5476 Query 139455 --CTTCTTATCTTCCGAACCCATGTTACGTT-TCATGTTAAGGAAATCAAAAACGTCAGC 139511 |||| | | | ||| || | | || || | ||||| ||||| || || | Sbjct 5477 AACTTCCTCTTTACCG------TGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGA 5530 Query 139512 GTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT---TTGCCACCTTGATCGAC 139568 |||||| ||||| || || || || | ||||| ||| || |||||||||||||| Sbjct 5531 GTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGAC 5590 Query 139569 GTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 || || | | || ||||| ||||| ||||| || Sbjct 5591 GTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGG 5626 >seq1413 Length=23416 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || ||||| || ||||| ||| | | Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| ||||| || |||||||||||| Sbjct 19438 GACACCATCGACAACGTAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAA 19379 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||||||||| ||| | || || ||| Sbjct 19378 CAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAAC 19319 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || |||||||||||| | || ||||| || || Sbjct 19318 ATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || | || || || | | Sbjct 20009 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 19950 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 19949 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 19890 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| || || || || || ||||| ||| | | | |||| || || ||| Sbjct 19889 CAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAAC 19830 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||| |||| ||||| |||| || ||| Sbjct 19829 ATCCAGAAGGAGAGCACTCTCCACCTGGTATTGCGTCTGCGAGGTGGC 19782 >seq1001 Length=42108 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || ||||| || || | | | Sbjct 35384 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC 35443 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| ||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| | ||| |||| |||| || || Sbjct 35564 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 35610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887707876520