Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1273 105 1e-16 seq1008 104 4e-16 seq1579 100 5e-15 seq1333 95.1 2e-13 >seq1273 Length=28106 Score = 105 bits (116), Expect = 1e-16 Identities = 207/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAA--TCGACCT 2019196 ||| | ||||||||||| | | |||||| | | ||| ||||||| || ||| Sbjct 6519 GGCATCGACGTCGTGCGCAACAGGATCAAGGGCTTTGCGC----AAAAGAAAGTCACCCT 6574 Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256 ||||| |||||||||||| | | |||||||| || |||||| || | ||||| | || Sbjct 6575 CCCGCCGGGCCGCCACAAGCTAGTAATCCTCGACGAAGCCGACAGCATGACGTCAGGTGC 6634 Query 2019257 CCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGC 2019316 ||||| ||||| || || ||||| | ||| | || ||||| || || || | || Sbjct 6635 GCAGCAAGCCCTGCGCCGCACGATGGAGATTTACTCGAATACGACTCGCTTCGCTTTCGC 6694 Query 2019317 CTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 ||| ||| |||| | | | ||||| | || ||| || ||||||||| | || | Sbjct 6695 CTGTAACCAGTCGAACAAGATTATCGAGCCGCTACAGTCGCGATGCGCCATCCTACGATA 6754 Query 2019377 TGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAA 2019436 | || || || ||||| ||| | | ||| ||| |||| ||||| ||||| || Sbjct 6755 CGGACGGCTGACAGACGCACAGGTGGTTAAGCGACTGTTGCAGATCATCGAGGCCGAGAA 6814 Query 2019437 GGTC 2019440 ||| Sbjct 6815 AGTC 6818 >seq1008 Length=41606 Score = 104 bits (114), Expect = 4e-16 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || |||||| ||||| ||||| |||||||| ||||||| || |||||| Sbjct 2403 TAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTCCATG 2344 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTC---GCACCCGAGCGACGCAAGCAGG 794024 | ||||||||||| | ||||| |||||| || || |||||| |||||| Sbjct 2343 AAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGC-CCAAAGCGAC--AAGCAGA 2287 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA--TGAGCG 794082 || ||||| ||||| ||||||||||| ||||||| || ||||| |||| || || Sbjct 2286 CGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAGACCG 2227 Query 794083 CCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGAT 794137 | | || || | ||| | | || |||| ||||||| ||||| |||| ||| Sbjct 2226 CAA--GGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGACGAT 2174 >seq1579 Length=18436 Score = 100 bits (110), Expect = 5e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| || || |||||||| || |||||| | || ||||| ||||| || ||| | | Sbjct 10156 CCAACTATCTTGATATCAAGCCTCTTCTCGATGTTGGCTGCAAAACCGTTGCAAACATGA 10215 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||||| || |||||||| ||||| ||||| || ||||| Sbjct 10216 TCAAGGGCAAATCCCCCGAGGAGATCCGGAAGACTTTCAACAT 10258 >seq1333 Length=25908 Score = 95.1 bits (104), Expect = 2e-13 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| ||||||||||| || || || |||||| |||| ||||||||| | | Sbjct 17401 GTACTTGGTGACCGCCTTGGTACCTTCAGATACAGCGTGCTTGGCAAGTTCGCCGGGGAG 17342 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||||||||| || | ||||||||| || || Sbjct 17341 GATCAGGCGGACTGAGGTCTGGATTTCACG 17312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916059287147201