Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1273 105 1e-16
seq1008 104 4e-16
seq1579 100 5e-15
seq1333 95.1 2e-13
>seq1273
Length=28106
Score = 105 bits (116), Expect = 1e-16
Identities = 207/304 (68%), Gaps = 8/304 (3%)
Strand=Plus/Plus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAA--TCGACCT 2019196
||| | ||||||||||| | | |||||| | | ||| ||||||| || |||
Sbjct 6519 GGCATCGACGTCGTGCGCAACAGGATCAAGGGCTTTGCGC----AAAAGAAAGTCACCCT 6574
Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256
||||| |||||||||||| | | |||||||| || |||||| || | ||||| | ||
Sbjct 6575 CCCGCCGGGCCGCCACAAGCTAGTAATCCTCGACGAAGCCGACAGCATGACGTCAGGTGC 6634
Query 2019257 CCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGC 2019316
||||| ||||| || || ||||| | ||| | || ||||| || || || | ||
Sbjct 6635 GCAGCAAGCCCTGCGCCGCACGATGGAGATTTACTCGAATACGACTCGCTTCGCTTTCGC 6694
Query 2019317 CTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376
||| ||| |||| | | | ||||| | || ||| || ||||||||| | || |
Sbjct 6695 CTGTAACCAGTCGAACAAGATTATCGAGCCGCTACAGTCGCGATGCGCCATCCTACGATA 6754
Query 2019377 TGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAA 2019436
| || || || ||||| ||| | | ||| ||| |||| ||||| ||||| ||
Sbjct 6755 CGGACGGCTGACAGACGCACAGGTGGTTAAGCGACTGTTGCAGATCATCGAGGCCGAGAA 6814
Query 2019437 GGTC 2019440
|||
Sbjct 6815 AGTC 6818
>seq1008
Length=41606
Score = 104 bits (114), Expect = 4e-16
Identities = 167/235 (71%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| || || |||||| ||||| ||||| |||||||| ||||||| || ||||||
Sbjct 2403 TAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTCCATG 2344
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTC---GCACCCGAGCGACGCAAGCAGG 794024
| ||||||||||| | ||||| |||||| || || |||||| ||||||
Sbjct 2343 AAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGC-CCAAAGCGAC--AAGCAGA 2287
Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA--TGAGCG 794082
|| ||||| ||||| ||||||||||| ||||||| || ||||| |||| || ||
Sbjct 2286 CGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAGACCG 2227
Query 794083 CCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGAT 794137
| | || || | ||| | | || |||| ||||||| ||||| |||| |||
Sbjct 2226 CAA--GGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGACGAT 2174
>seq1579
Length=18436
Score = 100 bits (110), Expect = 5e-15
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
||||||| || || |||||||| || |||||| | || ||||| ||||| || ||| | |
Sbjct 10156 CCAACTATCTTGATATCAAGCCTCTTCTCGATGTTGGCTGCAAAACCGTTGCAAACATGA 10215
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
|||||||||| || |||||||| ||||| ||||| || |||||
Sbjct 10216 TCAAGGGCAAATCCCCCGAGGAGATCCGGAAGACTTTCAACAT 10258
>seq1333
Length=25908
Score = 95.1 bits (104), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| ||||||||||| || || || |||||| |||| ||||||||| | |
Sbjct 17401 GTACTTGGTGACCGCCTTGGTACCTTCAGATACAGCGTGCTTGGCAAGTTCGCCGGGGAG 17342
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560
||||||||| || | ||||||||| || ||
Sbjct 17341 GATCAGGCGGACTGAGGTCTGGATTTCACG 17312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916059287147201
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |