Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1413 149 4e-31 seq1001 147 1e-30 seq1368 107 1e-18 >seq1413 Length=23416 Score = 149 bits (164), Expect = 4e-31 Identities = 164/216 (76%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| | |||||||||||||| ||||| ||||| || | | |||| |||| ||| Sbjct 19801 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 19860 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 ||||||||||| ||||| |||| ||||||||||||| | || | ||||||||||| | Sbjct 19861 AGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGA 19920 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || || ||||| || | ||||| || | ||| || || | ||| ||||| Sbjct 19921 ATCTTGGACTTGAC--AT--TGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGT 19976 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| || ||||| ||||| || |||||||||||||| Sbjct 19977 CTTGCCAGTGAGAGTCTTAACGAAGATCTGCATGAT 20012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | ||||||||||||||| ||||| ||||| || | || | || Sbjct 19514 CAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTC 19573 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| || |||| || |||||||| | || | ||||| ||||| Sbjct 19574 CTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTC 19633 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | || || |||| || || || Sbjct 19634 CTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGT 19693 Query 34945 CTTTCCCGTGAGGGTCTTTAC 34965 |||||| || |||||||| || Sbjct 19694 CTTTCCAGTCAGGGTCTTGAC 19714 >seq1001 Length=42108 Score = 147 bits (162), Expect = 1e-30 Identities = 166/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | ||||||||||||||| ||||| ||||| || ||| | || | || Sbjct 35596 CAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTC 35537 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| ||||||||||| | || | ||||||||||| Sbjct 35536 CTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTC 35477 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | | ||| || || | ||| | Sbjct 35476 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGA 35421 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| |||||||||||||| || |||||||||||||| Sbjct 35420 TAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 35381 >seq1368 Length=24850 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || | || || || ||||| |||||||||| Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | || || ||||| || | || | ||||||||||| | || || || || || Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCAC--AT- 8151 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| |||||||||||||| Sbjct 8150 -TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTG 8092 Query 34964 ACAAAGATCTGCA 34976 || |||||||||| Sbjct 8091 ACGAAGATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685817858821