Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1470 100 2e-15 seq1239 93.3 3e-13 >seq1470 Length=74857 Score = 100 bits (110), Expect = 2e-15 Identities = 205/301 (68%), Gaps = 13/301 (4%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||||||||| || | | |||| || | |||||| |||| || | || Sbjct 1598 TCAAAATCTTCACCACCTAGATGGGTATCACCAGCGGTAGCTAGAACTTCAAACACACCT 1657 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA---AATAA-G 282309 || || | ||| | ||| | ||||| || |||||||| | |||| | ||||| | Sbjct 1658 TCATCGATAGATAGAAGGGAGACATCGNAAGTACCACCACCAAGATCATACACAATAATG 1717 Query 282310 T-ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | || ||| | |||||| || ||||| || |||| ||||||||| || | Sbjct 1718 TGACGCTCACCA-TCAGTCTTG-------TCTAGACCGTAGGCAATAGCAGCAGCGGTAG 1769 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | || |||| || | || ||||| ||||||||||| | || ||||| || ||||| | Sbjct 1770 GCTCGTTAACGATACGCAGCACATTGAGACCAGCAATGATACCGGCATCCTTGGTGGCCT 1829 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 |||| || ||||| || || || |||||||| | ||||| | ||| || | ||| | Sbjct 1830 GTCTCTGGTTGTCGTTGAAGTAGGCGGGAACAGTGACGACGGCGTGTGTGACCTTTTTAC 1889 Query 282489 C 282489 | Sbjct 1890 C 1890 >seq1239 Length=29790 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || ||||| || |||| ||| |||||||| || || || | | | || |||||| Sbjct 10915 TTCTCCAGACCGTATGCAAGAGCGGCAGCAGTAGGCTCGTTGACCACACGCAGGACATTA 10856 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||| ||| |||||||| || || ||||| | || ||||| || || |||||| Sbjct 10855 AGACCAGAAATCTGACCTGCATCCTTGGTAGCTTGACGCTGGGAATCATTGAAGTATGCA 10796 Query 282455 GGAACAGTAATAACGGCAT 282473 |||||||| | ||||||| Sbjct 10795 GGAACAGTGACGACGGCAT 10777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740544040533534