Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 127 2e-24
seq1413 111 2e-19
seq1368 109 5e-19
seq1336 100 3e-16
seq1008 84.2 2e-11
>seq1001
Length=42108
Score = 127 bits (140), Expect = 2e-24
Identities = 150/201 (75%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
|||| ||| ||||| || ||||| ||| | || ||| ||||||||||||||||
Sbjct 35581 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGT--ACGGCCGTCCTCGAGCTGCTTG 35524
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || || ||||||||||| |||||||| |||||||| |||||| |
Sbjct 35523 CCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGAC 35464
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | |||||| | | |||||| |||| ||||| || ||||| || ||
Sbjct 35463 TTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGG 35404
Query 133641 GTTTTTACGAAAATCTGCATG 133661
|| || ||||| |||||||||
Sbjct 35403 GTCTTGACGAAGATCTGCATG 35383
>seq1413
Length=23416
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| ||||||||||||| || || ||| | || || |||||||| ||
Sbjct 19074 GTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCA-TCTTCCAGCTGCTTACC 19132
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || ||||||||||| ||||| || ||||||||||| ||||| |||
Sbjct 19133 AGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTGCTCTT 19192
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| || || | | ||||| || | ||||| ||| || || |||| ||
Sbjct 19193 CACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGT 19252
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 19253 CTTGACGAAGATCTGCAT 19270
Score = 104 bits (114), Expect = 2e-17
Identities = 141/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| || || ||| | | | || || || ||||| || |||
Sbjct 19818 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCTTCCAGTTGCTTTCCAGCGA 19876
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
|||| | || |||||||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 19877 AAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACAT 19936
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||| | | |||||| || | ||||| ||| ||||| || ||||| || |
Sbjct 19937 TGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAA 19996
Query 133648 CGAAAATCTGCATG 133661
|||| |||||||||
Sbjct 19997 CGAAGATCTGCATG 20010
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512
|| |||| || ||||| ||||| || ||||| |||| | || || || ||||| |
Sbjct 19293 AAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCG--TCCTCCA 19350
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||| || ||| | || || ||||| || ||||||||||| ||||||||||| ||
Sbjct 19351 GCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGA 19410
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||| | | || | ||||| | | || || || | || | || || |
Sbjct 19411 TCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTC 19470
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|||| || || || ||||| || ||||||
Sbjct 19471 CGGTGAGGGTCTTGACGAAGATTTGCATG 19499
>seq1368
Length=24850
Score = 109 bits (120), Expect = 5e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| ||||||||||| ||| | || || |||||||| || || ||||| || |||||
Sbjct 8233 GTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGGATTCCCTCCTT 8174
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||| | | || | ||||||| || ||| || |||| |||||
Sbjct 8173 GTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 8114
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659
||| ||||| || || || || ||||| |||||||
Sbjct 8113 GGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCA 8079
>seq1336
Length=25880
Score = 100 bits (110), Expect = 3e-16
Identities = 971/1549 (63%), Gaps = 57/1549 (4%)
Strand=Plus/Plus
Query 148258 GATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGTTGCTCGTAAAC 148316
|||| || || || || || ||||| | || || || ||| || | ||| ||| |
Sbjct 4528 GATTGACGACTTGGAATTCACCGGCTAAAACACGACG-AGAGTAAATGTTCGACGTGTAG 4586
Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376
|| || || | ||||| ||||||| |||||||| ||| | || || |||||| ||
Sbjct 4587 GGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCC 4646
Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436
| || || |||||| | ||| | | ||| || | ||| || | |||||||||
Sbjct 4647 ATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCC 4706
Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496
|| || || || || || ||||||||||| ||||| |||||||| | | | ||
Sbjct 4707 CAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGA 4766
Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA--GCTCGCCTCGA 148554
||||||||| | ||| | || | || || | || || | | || |
Sbjct 4767 GAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTC-CATTGAT-GCAGTCA 4824
Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGC-TT 148613
||| | | ||| || ||||| ||| ||| |||||||| | | | | || |
Sbjct 4825 AAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTG-TCGAGCTTCGGGCGAT 4883
Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673
|| | ||||| || || | || | ||||| || ||||| || || | |||||
Sbjct 4884 TCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATA 4943
Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGATAGTGGTTGCGGTCGAT 148732
|| ||||| |||||| | || || ||| || ||||||||||| ||||||
Sbjct 4944 GGGCGGTGGCGCATGTTGCTGTTACGTGC-CTCAGGGACAGGATAGTGGTTTGCGTCGAT 5002
Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792
|| ||| ||||||||||| || || | || | | ||||| || |||||| ||
Sbjct 5003 GACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATA 5062
Query 148793 -CTT-----GTCA---TCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843
||| || | || |||| | | |||| | || || || || | ||||| ||
Sbjct 5063 GCTTTCCGAGTTATAGTCCACGAAGGA-CGGT--AAAGCCATGGATGCCAAGTTGCAAAC 5119
Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGC-ATT 148899
|| ||||| || || |||||||| | |||||| | ||| ||||| || | | |
Sbjct 5120 AGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAAT 5179
Query 148900 TGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGT 148959
|| |||| |||||| || |||||||||| ||| ||||||||| ||||||
Sbjct 5180 TG----TACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGA 5235
Query 148960 ACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCG-ATGC---AGGTCCTGCGCG 149015
| || ||||| || ||| | || ||| ||| | || | || | ||| ||
Sbjct 5236 AGGGGTTTCCAGTCTCTGTCTGAG---CCTCTA-GAATGGCATACCAGAGCTTCTGGGCT 5291
Query 149016 CGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073
| ||| | ||||||||| || || | ||| | || || |||
Sbjct 5292 TTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGC--TTCAAACT 5349
Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133
| || |||||| |||| | ||||| | |||| || ||||||||| || | ||| ||
Sbjct 5350 CATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGC 5409
Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193
||| | | || || ||||| |||||||| || | ||| || || | |||||| |
Sbjct 5410 CGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCAC 5469
Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253
| || || || || ||| ||||| | || | |||| ||||
Sbjct 5470 GAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCG 5529
Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310
||||||||| || | ||| | || | |||||| || || || || || ||||
Sbjct 5530 AGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGA 5589
Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370
||| ||| | ||||||| || || || | ||| || | |||||| | | ||||| |
Sbjct 5590 CGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCAT 5649
Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430
| ||| | |||| | ||| || || | || || || | ||| || ||||
Sbjct 5650 TGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGC 5709
Query 149431 C-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489
| ||| | ||| || || || || || || || |||||||| || ||
Sbjct 5710 CAGCCAT-CTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTA 5768
Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549
|| |||||| | || ||||| || |||| || || | || || || |
Sbjct 5769 TCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTG 5828
Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609
|||| || ||| || || || || ||||| || ||| | | ||| | ||||||
Sbjct 5829 AACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGG 5888
Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669
|| || | || || || || |||| || || ||||| | ||| ||||| |||
Sbjct 5889 ACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGT 5948
Query 149670 CGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTT--TTCTAGTGTCTTGT 149724
| || | || | |||||| || || || ||| | || | || || ||||||
Sbjct 5949 CTCT---CGACAATCTTTCCATTGATCTTCAG-AAG-ATACGATCGCTCCAGAGTCTTGA 6003
Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
|||| ||||| | ||||| ||||||||| | | ||||||| | |||
Sbjct 6004 AGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGTC 6052
>seq1008
Length=41606
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || |||||||| || || || |||||||| ||||| | | ||||||||| |
Sbjct 2407 CTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTC 2348
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || |||||||||||| | | | || ||| | |||||| || |||||
Sbjct 2347 CATGAAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGCCCAAAGCGACAAGCAG 2288
Query 120471 TCGGTCCGCTACAAACTCAATGTACT 120496
|| || || || |||||||||||||
Sbjct 2287 ACGATCGGCCACGAACTCAATGTACT 2262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483410170785160
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