Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1001 127 2e-24 seq1413 111 2e-19 seq1368 109 5e-19 seq1336 100 3e-16 seq1008 84.2 2e-11 >seq1001 Length=42108 Score = 127 bits (140), Expect = 2e-24 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 |||| ||| ||||| || ||||| ||| | || ||| |||||||||||||||| Sbjct 35581 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGT--ACGGCCGTCCTCGAGCTGCTTG 35524 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || || ||||||||||| |||||||| |||||||| |||||| | Sbjct 35523 CCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGAC 35464 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | | |||||| |||| ||||| || ||||| || || Sbjct 35463 TTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGG 35404 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || ||||| ||||||||| Sbjct 35403 GTCTTGACGAAGATCTGCATG 35383 >seq1413 Length=23416 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||||||||||| || || ||| | || || |||||||| || Sbjct 19074 GTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCA-TCTTCCAGCTGCTTACC 19132 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 19133 AGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTGCTCTT 19192 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | ||||| || | ||||| ||| || || |||| || Sbjct 19193 CACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGT 19252 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 19253 CTTGACGAAGATCTGCAT 19270 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || || ||| | | | || || || ||||| || ||| Sbjct 19818 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCA-TCTTCCAGTTGCTTTCCAGCGA 19876 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 |||| | || |||||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 19877 AAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACAT 19936 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | | |||||| || | ||||| ||| ||||| || ||||| || | Sbjct 19937 TGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAA 19996 Query 133648 CGAAAATCTGCATG 133661 |||| ||||||||| Sbjct 19997 CGAAGATCTGCATG 20010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || |||| || ||||| ||||| || ||||| |||| | || || || ||||| | Sbjct 19293 AAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCG--TCCTCCA 19350 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || ||||| || ||||||||||| ||||||||||| || Sbjct 19351 GCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGA 19410 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | ||||| | | || || || | || | || || | Sbjct 19411 TCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTC 19470 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || ||||| || |||||| Sbjct 19471 CGGTGAGGGTCTTGACGAAGATTTGCATG 19499 >seq1368 Length=24850 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| ||||||||||| ||| | || || |||||||| || || ||||| || ||||| Sbjct 8233 GTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGGATTCCCTCCTT 8174 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | || | ||||||| || ||| || |||| ||||| Sbjct 8173 GTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 8114 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 ||| ||||| || || || || ||||| ||||||| Sbjct 8113 GGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCA 8079 >seq1336 Length=25880 Score = 100 bits (110), Expect = 3e-16 Identities = 971/1549 (63%), Gaps = 57/1549 (4%) Strand=Plus/Plus Query 148258 GATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGTTGCTCGTAAAC 148316 |||| || || || || || ||||| | || || || ||| || | ||| ||| | Sbjct 4528 GATTGACGACTTGGAATTCACCGGCTAAAACACGACG-AGAGTAAATGTTCGACGTGTAG 4586 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 || || || | ||||| ||||||| |||||||| ||| | || || |||||| || Sbjct 4587 GGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCC 4646 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 | || || |||||| | ||| | | ||| || | ||| || | ||||||||| Sbjct 4647 ATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCC 4706 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 || || || || || || ||||||||||| ||||| |||||||| | | | || Sbjct 4707 CAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGA 4766 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCA--GCTCGCCTCGA 148554 ||||||||| | ||| | || | || || | || || | | || | Sbjct 4767 GAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAATCTC-CATTGAT-GCAGTCA 4824 Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGC-TT 148613 ||| | | ||| || ||||| ||| ||| |||||||| | | | | || | Sbjct 4825 AAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTG-TCGAGCTTCGGGCGAT 4883 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 || | ||||| || || | || | ||||| || ||||| || || | ||||| Sbjct 4884 TCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATA 4943 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGATAGTGGTTGCGGTCGAT 148732 || ||||| |||||| | || || ||| || ||||||||||| |||||| Sbjct 4944 GGGCGGTGGCGCATGTTGCTGTTACGTGC-CTCAGGGACAGGATAGTGGTTTGCGTCGAT 5002 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 || ||| ||||||||||| || || | || | | ||||| || |||||| || Sbjct 5003 GACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAGCTTTTGAAAATCATA 5062 Query 148793 -CTT-----GTCA---TCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843 ||| || | || |||| | | |||| | || || || || | ||||| || Sbjct 5063 GCTTTCCGAGTTATAGTCCACGAAGGA-CGGT--AAAGCCATGGATGCCAAGTTGCAAAC 5119 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGC-ATT 148899 || ||||| || || |||||||| | |||||| | ||| ||||| || | | | Sbjct 5120 AGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAAT 5179 Query 148900 TGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGT 148959 || |||| |||||| || |||||||||| ||| ||||||||| |||||| Sbjct 5180 TG----TACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGA 5235 Query 148960 ACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCG-ATGC---AGGTCCTGCGCG 149015 | || ||||| || ||| | || ||| ||| | || | || | ||| || Sbjct 5236 AGGGGTTTCCAGTCTCTGTCTGAG---CCTCTA-GAATGGCATACCAGAGCTTCTGGGCT 5291 Query 149016 CGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073 | ||| | ||||||||| || || | ||| | || || ||| Sbjct 5292 TTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGC--TTCAAACT 5349 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 | || |||||| |||| | ||||| | |||| || ||||||||| || | ||| || Sbjct 5350 CATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGC 5409 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| | | || || ||||| |||||||| || | ||| || || | |||||| | Sbjct 5410 CGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCAC 5469 Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253 | || || || || ||| ||||| | || | |||| |||| Sbjct 5470 GAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCG 5529 Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310 ||||||||| || | ||| | || | |||||| || || || || || |||| Sbjct 5530 AGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGA 5589 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 ||| ||| | ||||||| || || || | ||| || | |||||| | | ||||| | Sbjct 5590 CGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCAT 5649 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 | ||| | |||| | ||| || || | || || || | ||| || |||| Sbjct 5650 TGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGC 5709 Query 149431 C-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 | ||| | ||| || || || || || || || |||||||| || || Sbjct 5710 CAGCCAT-CTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTA 5768 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549 || |||||| | || ||||| || |||| || || | || || || | Sbjct 5769 TCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTG 5828 Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609 |||| || ||| || || || || ||||| || ||| | | ||| | |||||| Sbjct 5829 AACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGG 5888 Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669 || || | || || || || |||| || || ||||| | ||| ||||| ||| Sbjct 5889 ACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGT 5948 Query 149670 CGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTT--TTCTAGTGTCTTGT 149724 | || | || | |||||| || || || ||| | || | || || |||||| Sbjct 5949 CTCT---CGACAATCTTTCCATTGATCTTCAG-AAG-ATACGATCGCTCCAGAGTCTTGA 6003 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 |||| ||||| | ||||| ||||||||| | | ||||||| | ||| Sbjct 6004 AGCCGAAGTATTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAGTC 6052 >seq1008 Length=41606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| || || || |||||||| ||||| | | ||||||||| | Sbjct 2407 CTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTC 2348 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || |||||||||||| | | | || ||| | |||||| || ||||| Sbjct 2347 CATGAAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGCCCAAAGCGACAAGCAG 2288 Query 120471 TCGGTCCGCTACAAACTCAATGTACT 120496 || || || || ||||||||||||| Sbjct 2287 ACGATCGGCCACGAACTCAATGTACT 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410170785160