Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1336 152 1e-31 seq1008 96.9 8e-15 >seq1336 Length=25880 Score = 152 bits (168), Expect = 1e-31 Identities = 353/529 (67%), Gaps = 5/529 (1%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTT 110527 |||||| | ||||| || || || || ||||| | || || || |||| ||||| Sbjct 5848 CATGCTTCCCCTACACTGTTCAATGCTGGAACCCC-GCAGCCTCAGATGTCTTCCTGCTT 5790 Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587 | | | || || |||||| |||||| || |||||||| | |||||| | ||| Sbjct 5789 CTTGGTCGACATGAAAGATGATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGC 5730 Query 110588 TCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG 110647 | | ||||| || | |||| |||||||| | | || ||| ||| || | | || Sbjct 5729 TATGATTTCCAAGATGGCTGGCGGAATTGGCCTGAATGTACATCGTATCCGTGCCACGGG 5670 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | | || || | || || | || | ||| | || || |||||| | ||||| Sbjct 5669 CTCTTACATTGCCGGTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTT 5610 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTAT 110764 |||| |||| || || || ||||||||||||| | || ||| | |||||||| Sbjct 5609 CAACAACACCGCCCGCTACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTAT 5550 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGG 110824 || |||||||| ||||| || ||| ||||||| ||| | || || || || || || || Sbjct 5549 TTACCTCGAACCGTGGCACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGG 5490 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 || ||| | || ||||| | || || | |||||| | ||| | ||||| Sbjct 5489 TAAAGAGGAAGTTCGTGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCAT 5430 Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944 |||||| ||| | | || |||| ||| | || ||||| || | | | ||||||| Sbjct 5429 GAAACGAGTTGAGAAGAACGGCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCT 5370 Query 110945 ATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 | ||||| || || | |||||||||| ||| ||||| || |||||| Sbjct 5369 TGCCGATGTCTACGGTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAA 5321 >seq1008 Length=41606 Score = 96.9 bits (106), Expect = 8e-15 Identities = 268/405 (66%), Gaps = 26/405 (6%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||||| ||| ||||| || || |||||| | || |||||| | |||| ||| | Sbjct 1896 TTCCTGCCATTCGCAAGAAGGCTGACTGGGCTCTAAAGTGGATT---GCTGAT--CGCAA 1950 Query 131847 AT----TTTTCTACAA-GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG 131901 | |||| ||| | || | ||||| ||| ||||||||||| ||||| || Sbjct 1951 TTCGACTTTTGCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGG 2010 Query 131902 TGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTC 131961 ||||||| ||||||| ||||| ||||||||||| ||||||| || || | || || Sbjct 2011 TGCTTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTC 2070 Query 131962 CAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAG 132021 || | |||||||| | || |||| | || || || ||||| ||||| | Sbjct 2071 TAACGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC-----CTGTCTATTG 2125 Query 132022 AAAATTTGC----TGATAAACTTG---ATGAAAATAATATTA-AACAACTTATAAGCGAA 132073 ||| | ||| ||| | | ||| | | || || | |||| ||| Sbjct 2126 ---TTTTCCCACTTGAAGAACCGGCCCAGCAAAGAAGTCGTAGAAGCAGTTATCGTCGAT 2182 Query 132074 GCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATG 132133 || || |||||| | || || | ||||| ||| | |||||| | || | || ||| Sbjct 2183 GCCGTGAGGATCGAGCAAGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATG 2242 Query 132134 AATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGT 132178 ||||| || |||||| |||||||||| ||||| || |||||| Sbjct 2243 AATGCAAACCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGT 2287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786052577399