Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1413 107 1e-18 seq1001 105 4e-18 >seq1413 Length=23416 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || ||| || |||| || ||||||||||| || || |||||||| || || Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| ||| ||||| || |||||||| || ||||| ||| | || Sbjct 19843 AAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGG 19902 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || | | |||| ||| | ||||| || ||||| Sbjct 19903 ATGCCCTCCTTGTCCTGAATCTT-GGACTTGACATTGTCGATAGTGTCCGAAGACTCCAC 19961 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 19962 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || |||||||| || || |||||||| || |||||| || |||| || | || Sbjct 19524 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTCCTCGAGCTGC 19583 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||||||||| |||||||| || | || | || |||||||| ||| ||| Sbjct 19584 TTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGAATCTTC 19643 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | ||||| ||||| || |||| |||||||| || || || Sbjct 19644 -GACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGTCTTTCCAGT 19702 >seq1001 Length=42108 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | ||| | || || |||||||| || || |||||||| |||| Sbjct 35612 CACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 35553 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| || || |||| || | || || ||||| || |||| ||| ||||| || | | Sbjct 35552 AGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGG 35493 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | ||| ||| | ||||||||| || ||| Sbjct 35492 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGCTCGACTCC 35434 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || || ||||||||||| Sbjct 35433 ACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696953305280