Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1336 111 2e-18 seq1008 98.7 1e-14 >seq1336 Length=25880 Score = 111 bits (122), Expect = 2e-18 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 259868 GAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCC 259927 ||| | || |||| |||||| | |||||| | | | |||||| || | || Sbjct 5896 GAGAAAGTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCTTCCCCT 5837 Query 259928 ACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATG 259987 || || || ||||| || || |||| || |||| || || ||||| || | |||||| Sbjct 5836 ACACTGTTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATG 5777 Query 259988 AAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAG 260047 || | ||| || |||||||| |||||||| || || || || | || |||||| Sbjct 5776 AAAGATGATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAG 5717 Query 260048 GCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCG 260107 ||| ||||| || || | | ||| | || ||| ||||| | ||| | || Sbjct 5716 ATGGCTGGCGGAATTGGCCTGAATGTACATCGTATCCGTGCCACGGGCTCTTACATTGCC 5657 Query 260108 GGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCG 260167 || ||||| ||| ||| || ||| | || |||||| | ||||| || ||| |||| || Sbjct 5656 GGTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCC 5597 Query 260168 CGCTACGTCGACCA 260181 ||||||||||| || Sbjct 5596 CGCTACGTCGATCA 5583 >seq1008 Length=41606 Score = 98.7 bits (108), Expect = 1e-14 Identities = 187/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 1456517 AAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCG 1456576 |||||| | |||||||| ||||| ||||||| |||| || | | ||| | || || Sbjct 2166 AAGCAGTT-ATCGTCGATGCCGTGAGGATCGAGCAAGAATTCCTGACAGAGGCTCTACC- 2223 Query 1456577 GTGGCGCTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 | ||| || |||| ||||| || | | |||||| ||||||||||| || || || Sbjct 2224 -TTGCGGTCTGCTCGGTATGAATGCAAAC-CTCATGAAGCAGTACATTGAGTTC-GTGGC 2280 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 ||| || ||||| | || | ||| | ||||| |||||| | ||||||||||| Sbjct 2281 CGATCGTCTGCTTGTCGCTTTGGGCAATG-AGAAGGTCTACCGCTCTACCAACCCGTTCG 2339 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCG 1456753 | |||||| || ||||||| |||||||| ||||| ||||| ||||| || | Sbjct 2340 ATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGCGTCGGTG 2399 Query 1456754 AGTACGCCAAGGCCGGCGTCACCGCCA 1456780 | ||| |||||||| || | |||| Sbjct 2400 ATTACCAGAAGGCCGGTGTTATGGCCA 2426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177641541216958