Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1001 125 6e-24 seq1413 111 1e-19 >seq1001 Length=42108 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | || | || |||||||| || |||||||| |||| Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || |||| || |||||||| | || Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | ||||||||||| |||||| Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACC 35431 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 35430 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384 >seq1413 Length=23416 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||||||| || ||||| | || |||||||||||||| || || Sbjct 19079 CTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAA 19138 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | ||||||||| ||||| ||||| || Sbjct 19139 GATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTGCTCTTCA-CGT 19197 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || || ||||||||| |||| ||||| || || || ||||| || || | Sbjct 19198 TGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGA 19257 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 19258 CGAAGATCTGCAT 19270 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | | |||||| |||| |||| |||||| ||||||||||| ||| Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| |||||||||||||| || || || | ||||| || || | ||| Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| |||||| ||| | |||| | | ||||| ||||| || Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTTTA-CGTTGTCGATGGTGTCTGAAGATTCGAC 19450 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || ||||| || || || | || || || || || ||||| Sbjct 19451 TTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| || | ||||| |||| || |||||||| || Sbjct 19530 GTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCG 19589 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| ||||||||||| | || | || ||| |||||| ||||| ||| Sbjct 19590 GCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTG 19649 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | |||| | | ||||| ||||| ||||| | |||||||| || || |||| Sbjct 19650 A-CGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTGATCGTCTTTCCAGTCA 19704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783688175720