Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1413 122 9e-23 seq1001 118 1e-21 seq1368 89.7 5e-13 >seq1413 Length=23416 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||||||||| || ||||| |||||||||||||||| | || | ||| || Sbjct 19289 CACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTC 19348 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| || || || || || | ||||| |||||||| || || ||||| || ||||| Sbjct 19349 CAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 19408 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || ||| | ||||| || ||||| || || |||||||| || || Sbjct 19409 GATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTT 19468 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 19469 TCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||| ||||| || ||||||||||| | | || | Sbjct 19509 AGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGTTCGG 19568 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || ||||||||||| |||||||| ||||| || ||||| ||| Sbjct 19569 CCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCT 19628 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| || ||||| || || || || Sbjct 19629 TTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGTGTG 19688 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || || || || || | || || |||| Sbjct 19689 ATCGTCTTTCCAGTCAGGGTCTTGACGA 19716 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| || ||||| || ||||| || ||| ||||| || ||||||||||| | | Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | || || || || || || || |||||||| || ||||| || || || Sbjct 19843 AA-GGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGG 19901 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| || ||||| ||| | ||||| || || ||||| Sbjct 19902 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCAC 19961 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | ||| |||||||| || ||||| Sbjct 19962 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| || || ||||| |||| Sbjct 19044 CCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTC 19103 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || || || || || | |||||||| || || || Sbjct 19104 AGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGA 19163 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || ||| | || || ||||||||||| Sbjct 19164 ATACCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACT 19223 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || || || || ||||| || ||||| Sbjct 19224 TCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 >seq1001 Length=42108 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| || ||| ||||| || |||||||||||| | ||| | Sbjct 35601 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 35542 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||| ||||| ||||| || ||||| || Sbjct 35541 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCC 35482 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||| ||| ||||| ||||| || Sbjct 35481 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCGAGGGTG 35422 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 35421 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384 >seq1368 Length=24850 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | ||| || ||||| ||||| || || | Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | |||||||||||| || || || || || || || || || || || || || Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 8148 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || ||||| || ||||| || || || | || || |||| Sbjct 8147 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 8088 Query 134704 AAATTTGCA 134712 | || |||| Sbjct 8087 AGATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387287552680