Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1336 255 8e-63 >seq1336 Length=25880 Score = 255 bits (282), Expect = 8e-63 Identities = 1179/1848 (64%), Gaps = 47/1848 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| ||| | || | || ||| ||||| |||||||| || || |||||| Sbjct 4191 GTGAATTGAATAGGTTGAGCGGCAGCTTGTGTTCGTAGGTAGTACATGCCAGTCTTCAGA 4250 Query 68434 CCTAGACTCCATCC-GTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492 || || |||| || ||| || ||||| || || | ||| | || || || Sbjct 4251 CCAAGCTTCCACCCAGTA-AAGTGCATGCTCGTGATCTTGCCCATTGTGGGCTCCCTCAT 4309 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 ||||||||| | ||||| ||||| |||||||| || | ||| || ||||||| | Sbjct 4310 ATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGGCAGCCATTTGCAC 4369 Query 68553 AATACTCTTT--TGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGA 68610 |||| || |||| ||||||||| | |||||| | | ||||| || | ||| Sbjct 4370 --TACTGTTCGCTGAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTGACTTCCGCCGGA 4427 Query 68611 AGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCA 68667 | ||| | || | |||| ||| ||||| |||| || || ||||| || | |||| Sbjct 4428 ATGCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTCTTCATATTATCA 4487 Query 68668 TTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCC 68727 ||| | | || | | | | || || ||||| || | ||| ||||| Sbjct 4488 GACCATAGACCTAGATCGACCAGATCCTTCAGAAGCCATGGATTGACGACTTGGAATTCA 4547 Query 68728 CCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTT 68787 || | ||| || | ||||| |||||| || || || || || | |||| ||||| Sbjct 4548 CCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTG 4607 Query 68788 CCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 68847 |||||||| || | || || || ||||| || |||| | | ||| || | | | Sbjct 4608 CCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACA 4667 Query 68848 CCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACA 68907 |||||| | |||| | || || || ||| |||||||||||||| || ||| Sbjct 4668 CCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATCAGAGGGAGTGACA 4727 Query 68908 TTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAA 68967 ||||| | || || || ||||| || | | || || || | || || ||| Sbjct 4728 TTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAA 4787 Query 68968 GGTCCTTCCTGTTCAGCTAGTTCACAACT--TGCCTCTAATGCACCGTAATAAATTGTTT 69025 | ||||| | | ||| | || | | | ||| || || | | || || || | Sbjct 4788 GTACCTTCTTCCTTAGCAA--TCTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCT 4845 Query 69026 CGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA 69085 | ||||||| ||| ||||| | | | ||||| | || || || | | | || Sbjct 4846 CAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAA 4905 Query 69086 TAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAAC 69145 || | ||| || | ||||| || || | ||| ||||| | || | | | || | Sbjct 4906 GGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTT-GCTG 4964 Query 69146 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204 || | || || || | |||||| | || || || | | | || ||||| || || Sbjct 4965 TTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACA 5024 Query 69205 ACTACTT---TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC--ATCTATAACAA 69259 || |||| | ||| ||| | || || |||||||| | | | | | |||| Sbjct 5025 ACAACTTGGGTTACCTCGTGC---AGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCC 5081 Query 69260 ACATATT-CAGT---GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 || | | || || | ||||| | || ||||| || || |||| | | ||| Sbjct 5082 ACGAAGGACGGTAAAGCCATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGA---GCA 5138 Query 69316 ---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 || | || ||||| || || |||||| || || || ||||| || | ||| Sbjct 5139 CTGTACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGG 5198 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 || ||||| || | ||||||||| || || || || | ||||| || ||||| Sbjct 5199 TTGCTCTTGCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGA 5258 Query 69433 GATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTC 69489 | || | ||| | | ||| | | || ||||| |||| | | | | Sbjct 5259 GCCTCTAGAATGGCATACCAGAGCTTCTGGGCTTTTATC---GTCTGGCGGCCGCGACCC 5315 Query 69490 TCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || |||||| || | ||| | || ||| || ||||| || | ||||| | | | Sbjct 5316 TCAGCTTCATACTTCTCGTAGAGGGC--TTCAAACTCATCACCGTAGACATCGGCAAGAC 5373 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 ||| ||| || || || ||||||| || ||| | | | || |||||||||||| | Sbjct 5374 CAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGA 5433 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 | ||||| ||||||||||| |||| ||||| || | | | | ||| || || || Sbjct 5434 ACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGT 5493 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 || ||| ||||| || ||||| | | ||| || ||||| ||||| || || || | Sbjct 5494 GGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAG 5553 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | | |||||||||||||| || || ||||| | ||| | ||| ||||| || ||| Sbjct 5554 CAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGA 5613 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 | | | ||| || | || ||||| || | ||||| || || | ||| ||| || Sbjct 5614 CGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCG 5673 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || ||| | | | || || ||||| || ||||| || || || | ||||| Sbjct 5674 TGGCACGGATACGATGTACATTCAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCAC 5733 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | ||| | |||||||| || ||||| || ||||||||| |||||| | | || | Sbjct 5734 ATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGC 5793 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 || |||||| ||| | || ||||| ||||| || | |||||| || || || |||| Sbjct 5794 AGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGA 5853 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC--CCACTGATG 70085 | |||| || | || ||||| || || | || || | ||| | | | Sbjct 5854 AGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCA-- 5911 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||| |||| ||| |||||||| | ||| |||||||||| || || | || ||| || Sbjct 5912 AATACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACAATCTTTCCATTGAT 5971 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 |||| || || ||| |||||||| || || || || || | ||| Sbjct 5972 CTTCAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTA 6019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893696592760