Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1336 206 3e-48 >seq1336 Length=25880 Score = 206 bits (228), Expect = 3e-48 Identities = 895/1394 (64%), Gaps = 31/1394 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| || || |||||||| ||||| |||| || || | ||| Sbjct 4568 GTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACT 4627 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| || ||||| | |||||||| || | ||| | | ||||| | || Sbjct 4628 GGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTC 4687 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| | ||||||| | | | || || | || |||| |||||||| ||||| Sbjct 4688 CTTGAGGGTAGCCCAGTCCCAAAGATCAGAG-GGAGTGACATTCC-ACATGTCATACTGA 4745 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | ||||| || | ||||| ||||| | || || | ||||| | | ||| Sbjct 4746 AGAATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCA 4805 Query 110945 AATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || | | | || || | || || |||||||| ||||| || | || | Sbjct 4806 ATCTCCATTGAT-GCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAG 4864 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || ||||| || ||||| | |||| || || ||| || ||||| Sbjct 4865 CTGTCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACC 4924 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120 || ||||| | ||||||||| | ||| ||||| || || || || |||| || Sbjct 4925 CTGGACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGC---CTCAGGGAC 4981 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||||| ||| ||| ||||||| ||| ||||| ||||| | || | || Sbjct 4982 AGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTC 5041 Query 111181 ATGAAGTTTTTCATAATCAAAAGTG--CGAGTC-TCTTCATTGACATACTTTGGAAGGGC 111237 || || |||| | ||||| | | ||||| | || || || || | || Sbjct 5042 GTGCAGCTTTTGAAAATCATAGCTTTCCGAGTTATAGTCCACGAAGGAC---GGTAAAGC 5098 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 || |||||||| ||||||||||| ||||| | | ||||||| | || || || Sbjct 5099 CATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGT 5158 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | || ||||| ||| || |||| ||||| ||||| ||||| ||| Sbjct 5159 GCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTG 5218 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||||||| |||| | || ||||| ||||| | | ||||| || | ||| Sbjct 5219 GTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCA 5278 Query 111418 -AACATCGGCGGCTGGTA--CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 | | || | |||| || ||||| | | || ||||| || || ||||| ||| Sbjct 5279 GAGCTTCTG-GGCTTTTATCGTCTGGCG--GCCGCGACCCTCAGCTTCATACTTCTCGTA 5335 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||||||||||||||| ||||| | |||| ||||| | || || || || | Sbjct 5336 GAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACAT 5395 Query 111535 AAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 || | ||| || | ||| |||||| || |||||||| || || |||||||| |||| Sbjct 5396 CAGTGTCCAGCTGCCGTTCTT-CTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGG 5454 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | ||||| || | | ||| | || || | ||| ||||| ||| | || |||| Sbjct 5455 CTAGGAAGAGGTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGA 5514 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---AC 111710 |||| | | ||||| |||||| || || || || | || | || ||| ||| | Sbjct 5515 ACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTAT 5574 Query 111711 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 111770 ||| |||||| || ||||| || ||| ||| || ||||| | ||| || | || | Sbjct 5575 TACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGC 5634 Query 111771 CATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 111830 ||| || ||||| || || ||| ||| |||| | | | ||| | | Sbjct 5635 CATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACAT 5694 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 || ||||| || |||||| ||| || || ||||| |||| || |||| | Sbjct 5695 TCAGGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAA 5754 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 | || | || || || || || ||| | |||||| |||||||| || | Sbjct 5755 TGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCG 5814 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTG 112009 | || ||||||||||| || || || | || || |||| || | ||||||| | Sbjct 5815 GGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAA-GTATTTGAGGGACATGAGG 5873 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATG 112069 | ||| ||||| | ||| |||| || || || || || | || || |||||| Sbjct 5874 TTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATG 5933 Query 112070 AACATGTACTGTGG 112083 | ||||| ||| || Sbjct 5934 ATCATGTGCTGAGG 5947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018191146400