Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1336 298 6e-76 seq1008 109 6e-19 >seq1336 Length=25880 Score = 298 bits (330), Expect = 6e-76 Identities = 916/1394 (66%), Gaps = 33/1394 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||||| | |||||| || || || |||| ||| Sbjct 5947 CCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGACGATGTTGAGAAAGTC 5888 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||||| | || |||| || || | || || || || Sbjct 5887 CTCGAGACCTACAACCTCATGTCCCTCAAATAC-TTCACCCATGCTTCCCCTACACTGTT 5829 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||| |||||| | ||| || || || || Sbjct 5828 CAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAAGATGA 5769 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || | || || |||| || |||| ||||| || || ||| |||||| Sbjct 5768 TAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATGGCTGG 5709 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || ||||| || | | ||| | | | |||| ||| ||| || || || Sbjct 5708 CGGAATTGGCCTGAATGTACATCGTATCCGTGCCACGGGCTCTTACATTGCCGGTACCAA 5649 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| || |||| || | || ||| | ||||| || ||| ||| || ||||| || Sbjct 5648 TGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCCGCTACGT 5589 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||||| ||| | ||| ||| || | || | || || || || |||||| | Sbjct 5588 CGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGTGGCACTC 5529 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-C 104696 |||| | | |||||||| || |||| ||||| ||| | ||||| | || ||| | Sbjct 5528 GGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTCG-TGCTC 5470 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | || |||||| || || |||||||| ||||| |||||||| |||||||| ||| | Sbjct 5469 GTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGAAGAACG 5410 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 ||| ||| | || | || || || || ||||||| |||||| | ||||| | Sbjct 5409 GCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACGGTGATG 5350 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGCC 104874 ||||||||||||| ||| ||||| || | || |||| ||| | || |||| | Sbjct 5349 AGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTC--GCGGCCGCCAGACGATAAA 5292 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | || | | ||| | || ||||| || |||| || |||||||| | || | || Sbjct 5291 AGC-CCAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAGACTGGAAACCCCTTCA 5233 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||| | || | ||||| || || ||||| ||||| || | Sbjct 5232 TGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAACCTGGGTACAATTCGTA 5173 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 |||| |||||||| || || ||| | || | | | |||||| ||||| || | Sbjct 5172 GTTCTAATCTCTGCACTGAGATCATTGAGTACAGTGCTCCAGATGAAGTTGCTGTTTGCA 5113 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGATTA 105111 || | ||||| || ||| | || | ||||| | | | || || | | ||||| Sbjct 5112 ACTTGGCATCCATGGCTTTACCGTCCTTCGTGGA-CTATA-ACTCGGAAAGCTATGATTT 5055 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | |||| || ||||| || || || ||| || || |||||||| || || Sbjct 5054 TCAAAAGCTGCACGAGGTAACCCAAGTTGTTGTGCGCAATCTGAACAGAGTCATCGACGC 4995 Query 105172 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 ||| || || || |||| || ||||| || ||| | ||||| || ||||| Sbjct 4994 AAACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGCCACCGCCCTATTGG 4938 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 ||||||||| |||||||| || ||| ||| || | ||| | ||||| || Sbjct 4937 TCTCGGTGTCCAGGGTCTAGCCGATACCTTCCTTGCTCTCCGCATGCCTTTTGAATCGCC 4878 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 |||||| | |||| || || |||||||||||||| || |||||| |||| | Sbjct 4877 CGAAGCTCGACAGCTCAACAAGCAGATTTTTGAGACCATGTACCATGCCGCT-TTGA--C 4821 Query 105349 GAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 ||| ||| | || ||| || ||| | || || | ||||| ||||| | Sbjct 4820 TGCATCAATGGAGATTGCTAAGGAAGAAGGTACTTACTCTACTTACGAGGGCTCTCCTGT 4761 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGAC 105463 ||| ||||| | ||||| | ||| |||| |||| || | || || || | ||| Sbjct 4760 TTCTCAAGGCATTCTTCAGTATGACATGT-GGAATGTCACTCC-CTCTGATCTTTGGGAC 4703 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 |||| | |||||||| | ||||| | | ||| | || |||||||||||||||||| Sbjct 4702 TGGGCTACCCTCAAGGAGCAGATCAAACAACATGGTGTACGCAACAGTCTCCTCATGGCT 4643 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||| ||| | || || |||| ||||| |||||||| || |||||| Sbjct 4642 CCCATGCCGACCGCCAGTACCTCGCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTAC 4583 Query 105584 ACGACGAACATCTA 105597 ||| ||||||| || Sbjct 4582 ACGTCGAACATTTA 4569 >seq1008 Length=41606 Score = 109 bits (120), Expect = 6e-19 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAAAGTCGCGTTCCTTT 94800 |||| ||||| || || |||||| | |||||| ||| || || ||| || || Sbjct 1904 ATTCGCAAGAAGGCTGACTGGGCTCTAAAGTGGATTGCTGATCGCAATTCGACTT---TT 1960 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || | || || | || || || ||||| |||||||||||| ||| | ||| | Sbjct 1961 GCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTCGCC 2020 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 |||| | |||||||||||||| ||||| ||||| || || |||||| |||||||| Sbjct 2021 TCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAGCTC 2080 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| |||||||| || |||||| || ||||| Sbjct 2081 ATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247975553160