Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq873 156 1e-32
seq1413 141 3e-28
seq1470 136 1e-26
seq1221 98.7 3e-15
seq1336 96.9 1e-14
seq1158 84.2 7e-11
>seq873
Length=51870
Score = 156 bits (172), Expect = 1e-32
Identities = 460/704 (65%), Gaps = 5/704 (1%)
Strand=Plus/Plus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| |||| || || || || || || || || || || | ||| | | | | || |
Sbjct 49642 CCGCCGTAGGTATTGACTTGGGCACGACCTACTCGTGCGTCGGTGTCTACCGAGACGACC 49701
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | || || ||||| ||||| || |||||| ||||||| || || | |||||| || |
Sbjct 49702 GAATTGAGATCATTGCCAATGACCAGGGTAACCGAACAACACCGTCGTTCGTTGCCTTCA 49761
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
| || || |||||| |||| || ||| | || || || || | || || || |
Sbjct 49762 CAGATACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCGTCTA 49821
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436
| || || || || || ||||| || ||||| | | ||| | ||| || ||
Sbjct 49822 ACACAGTCTTCGACGCCAAGCGTCTGATTGGCCGCAAGTTTGCCGACCAAGAGGTTCAGG 49881
Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496
| || | || || || || || | | | || | ||| || | || || || | |
Sbjct 49882 CCGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGCGGCAAGCCTATCGTCG 49938
Query 349497 AGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||| || || || || || || || || || ||||| || || || || |||||
Sbjct 49939 AGGTCGAGTACAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCTTCCATGGTC 49997
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | || || || || | |||| || || | | |||||
Sbjct 49998 CTCACCAAGATGCGCGAGACCGCCGAGGCTTACCTGGGTGGTACCGTCAACAACGCTGTC 50057
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
|| || || || ||||| || || || ||||||||| || || || ||||| || |
Sbjct 50058 ATCACCGTCCCTGCCTACTTCAACGACGCCCAGCGTCAAGCCACCAAGGATGCCGGTCTC 50117
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
||||| || | || ||||| | || || || || || || ||||| || || || ||
Sbjct 50118 ATTGCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCCATCGCTTAC 50177
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| ||||| || | | || || || |||| || || ||| | |||||||||
Sbjct 50178 GGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTTCTGATCTTCGATCTCGGTGGTGGT 50237
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || |||| ||||| || || || || || | ||||||
Sbjct 50238 ACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCT 50297
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899
||||| || || | ||||| || || || || || || |||||
Sbjct 50298 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGT 50341
>seq1413
Length=23416
Score = 141 bits (156), Expect = 3e-28
Identities = 174/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || || || || ||||||||||| || || ||||| ||
Sbjct 19037 TTACTGACCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTA 19096
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| | ||||| |||||||| || || || ||||| ||||| || || ||||| ||
Sbjct 19097 ATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTC 19156
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATG 140682
|||||||| ||||| || |||||||| || ||| || || || ||||| | ||| || |
Sbjct 19157 TGGAGGAATACCTTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCAATGGTATCTGACG 19215
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| | || | |||||||| || | ||| || || || ||||||||
Sbjct 19216 ATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270
Score = 127 bits (140), Expect = 6e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| || | || || | || || |||||||| || ||||| || || ||
Sbjct 19268 CATACCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTC 19327
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| ||||| || || || || || || ||||| ||||| || || || ||||| ||
Sbjct 19328 GCTTAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGG 19387
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||| || ||||| || || || || || ||| ||||| || || || | || || | ||
Sbjct 19388 AGGGATACCTTCCTTGTCTTGGATCTT-GCTCTTTACGTTGTCGATGGTGTCTGAAGATT 19446
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || |||| ||||||||||| || || || || || || |||||
Sbjct 19447 CGACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
>seq1470
Length=74857
Score = 136 bits (150), Expect = 1e-26
Identities = 244/356 (69%), Gaps = 3/356 (1%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||||||||| || | | || | | || |||||||| |||| || |||| |
Sbjct 1950 CCCGAAGAAATCTCTGCCGTCATTCTCGGCAAGATGAAGGAGGTTGCCGAGTCATACCTG 1891
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
||| ||| || || | || || | ||||| || ||||| || || || |||| |
Sbjct 1890 GGTAAAAAGGTCACACACGCCGTCGTCACTGTTCCCGCCTACTTCAACGACAACCAGAGA 1831
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || | |||||| || | ||||| || | || |||| ||
Sbjct 1830 CAGGCCACCAAGGATGCCGGTATCATTGCTGGTCTCAATGTGCTGCGTATCGTTAACGAG 1771
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| || ||||| || ||||| || || || || || || ||| || | |||
Sbjct 1770 CCTACCGCTGCTGCTATTGCCTACGGTCTAGACAA---GACTGATGGTGAGCGTCACATT 1714
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| | | |||| | ||||||||||||| ||||| || || ||| | | || || ||
Sbjct 1713 ATTGTGTATGATCTTGGTGGTGGTACTTNCGATGTCTCCCTTCTATCTATCGATGAAGGT 1654
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
| ||||||||| ||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct 1653 GTGTTTGAAGTTCTAGCTACCGCTGGTGATACCCATCTAGGTGGTGAAGATTTTGA 1598
Score = 93.3 bits (102), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740
||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||| | ||
Sbjct 1598 TCAAAATCTTCACCACCTAGATGGGTATCACCAGCGGTAGCTAGAACTTCAAACACACCT 1657
Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCA 183788
|| || ||| || || || ||||| | ||||||||||| | ||||
Sbjct 1658 TCATCGATAGATAGAAGGGAGACATCGNAAGTACCACCACCAAGATCA 1705
>seq1221
Length=30703
Score = 98.7 bits (108), Expect = 3e-15
Identities = 195/282 (69%), Gaps = 5/282 (2%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || || || || || || || || || ||||||| || || || |||||
Sbjct 10646 GCCGTCATCACCGTCCCGGCTTACTTCAACGACAACCAGCGTCAGGCCACCAAGGATGCC 10705
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||| | || | ||||| || | || ||||| ||||| ||||| || || |||
Sbjct 10706 GGTGCCATTTCCGGTCTTAATGTCCTTCGTATCATTAACGAACCTACTGCCGCTGCTATT 10765
Query 349730 GCATATGGGCTTGA-TAAAATGAGT-GACCAAGaaaaa-aaTATTCTTATTTTTGATTTA 349786
|| || || |||| | ||| ||| || |||| | ||| | || || | ||| |
Sbjct 10766 GCCTACGGTCTTGGGTCAAACAAGTCGAACAAGGAGCGTAATGTGCTGATCTACGATCTT 10825
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTTAA 349845
|||||||||||||||||||| || || || | || | || | | | || | || ||
Sbjct 10826 GGTGGTGGTACTTTTGATGTGTCCCTCCTGA-ACATCCAGGGTGGCGTCTTCACCGTCAA 10884
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
|| || ||||||||||| ||||| ||||| ||||||| ||
Sbjct 10885 GGCTACCGCTGGTGATACTCATCTAGGTGGCCAAGATTTCGA 10926
>seq1336
Length=25880
Score = 96.9 bits (106), Expect = 1e-14
Identities = 188/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 206458 TATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGAAGTTCCATTT 206517
|| || || || || || || |||| || ||| || | || ||||| || || |||||
Sbjct 5592 TAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTG 5651
Query 206518 GTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCCAATTCCTCCT 206577
|| || ||| | | ||| || | | ||| ||||| || | |||||||| ||
Sbjct 5652 GTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCA 5711
Query 206578 GCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATCAACACTATCA 206637
||| || ||||| |||||||| ||| | || | |||||| || |||| |||||||
Sbjct 5712 GCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCA 5771
Query 206638 CTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCCAGCATTAAAT 206697
|| ||| | | || || || ||| | || || | || ||||||||||| ||
Sbjct 5772 TCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAAC 5831
Query 206698 AAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735
| ||||| | |||||| || || ||||| | |||||
Sbjct 5832 AGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACAT 5869
>seq1158
Length=32881
Score = 84.2 bits (92), Expect = 7e-11
Identities = 110/152 (72%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 377442 TAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGC 377501
||| || |||| | ||||| |||||| | || |||||| || || |||| ||| |
Sbjct 29953 TAAGATCTCTTTCAGCCGTGGAACACCAAGAGTGACATTC---TTCGACGCAATACCTGT 29897
Query 377502 AAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAAT 377561
|||||||| || || | || | ||| || | || || ||||||||||| || || |
Sbjct 29896 GAAGTGGAAGGTGTTCAACGTCATTTGGGTGGCCGGTTCGCCAATTGACTGAGCAGCTAA 29837
Query 377562 AACGCCAACCATTTCTCCAGGATTGACAATAG 377593
||| ||||||||||| || || || || ||||
Sbjct 29836 AACACCAACCATTTCACCTGGGTTAACCATAG 29805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515220250427477
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |