Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq873 156 1e-32 seq1413 141 3e-28 seq1470 136 1e-26 seq1221 98.7 3e-15 seq1336 96.9 1e-14 seq1158 84.2 7e-11 >seq873 Length=51870 Score = 156 bits (172), Expect = 1e-32 Identities = 460/704 (65%), Gaps = 5/704 (1%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| |||| || || || || || || || || || || | ||| | | | | || | Sbjct 49642 CCGCCGTAGGTATTGACTTGGGCACGACCTACTCGTGCGTCGGTGTCTACCGAGACGACC 49701 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || ||||| ||||| || |||||| ||||||| || || | |||||| || | Sbjct 49702 GAATTGAGATCATTGCCAATGACCAGGGTAACCGAACAACACCGTCGTTCGTTGCCTTCA 49761 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || || |||||| |||| || ||| | || || || || | || || || | Sbjct 49762 CAGATACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCGTCTA 49821 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || || ||||| || ||||| | | ||| | ||| || || Sbjct 49822 ACACAGTCTTCGACGCCAAGCGTCTGATTGGCCGCAAGTTTGCCGACCAAGAGGTTCAGG 49881 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 | || | || || || || || | | | || | ||| || | || || || | | Sbjct 49882 CCGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGCGGCAAGCCTATCGTCG 49938 Query 349497 AGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||| || || || || || || || || || ||||| || || || || ||||| Sbjct 49939 AGGTCGAGTACAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCTTCCATGGTC 49997 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | || || || || | |||| || || | | ||||| Sbjct 49998 CTCACCAAGATGCGCGAGACCGCCGAGGCTTACCTGGGTGGTACCGTCAACAACGCTGTC 50057 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 || || || || ||||| || || || ||||||||| || || || ||||| || | Sbjct 50058 ATCACCGTCCCTGCCTACTTCAACGACGCCCAGCGTCAAGCCACCAAGGATGCCGGTCTC 50117 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || ||||| | || || || || || || ||||| || || || || Sbjct 50118 ATTGCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCCATCGCTTAC 50177 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | || || || |||| || || ||| | ||||||||| Sbjct 50178 GGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTTCTGATCTTCGATCTCGGTGGTGGT 50237 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | |||||| Sbjct 50238 ACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCT 50297 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||||| || || | ||||| || || || || || || ||||| Sbjct 50298 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGT 50341 >seq1413 Length=23416 Score = 141 bits (156), Expect = 3e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || || || || ||||||||||| || || ||||| || Sbjct 19037 TTACTGACCGCCACGGAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTA 19096 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | ||||| |||||||| || || || ||||| ||||| || || ||||| || Sbjct 19097 ATCGCTCAGAGTTCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTC 19156 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATG 140682 |||||||| ||||| || |||||||| || ||| || || || ||||| | ||| || | Sbjct 19157 TGGAGGAATACCTTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCAATGGTATCTGACG 19215 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | || | |||||||| || | ||| || || || |||||||| Sbjct 19216 ATTCCACTTCCAAGGTGATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 127 bits (140), Expect = 6e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| || | || || | || || |||||||| || ||||| || || || Sbjct 19268 CATACCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTC 19327 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || ||||| || || || || || || ||||| ||||| || || || ||||| || Sbjct 19328 GCTTAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGG 19387 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||| || ||||| || || || || || ||| ||||| || || || | || || | || Sbjct 19388 AGGGATACCTTCCTTGTCTTGGATCTT-GCTCTTTACGTTGTCGATGGTGTCTGAAGATT 19446 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| ||||||||||| || || || || || || ||||| Sbjct 19447 CGACTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498 >seq1470 Length=74857 Score = 136 bits (150), Expect = 1e-26 Identities = 244/356 (69%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||||||||| || | | || | | || |||||||| |||| || |||| | Sbjct 1950 CCCGAAGAAATCTCTGCCGTCATTCTCGGCAAGATGAAGGAGGTTGCCGAGTCATACCTG 1891 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| ||| || || | || || | ||||| || ||||| || || || |||| | Sbjct 1890 GGTAAAAAGGTCACACACGCCGTCGTCACTGTTCCCGCCTACTTCAACGACAACCAGAGA 1831 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | |||||| || | ||||| || | || |||| || Sbjct 1830 CAGGCCACCAAGGATGCCGGTATCATTGCTGGTCTCAATGTGCTGCGTATCGTTAACGAG 1771 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || ||||| || ||||| || || || || || || ||| || | ||| Sbjct 1770 CCTACCGCTGCTGCTATTGCCTACGGTCTAGACAA---GACTGATGGTGAGCGTCACATT 1714 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | |||| | ||||||||||||| ||||| || || ||| | | || || || Sbjct 1713 ATTGTGTATGATCTTGGTGGTGGTACTTNCGATGTCTCCCTTCTATCTATCGATGAAGGT 1654 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 | ||||||||| ||| || ||||||||||| ||||| ||||| ||||||||||| Sbjct 1653 GTGTTTGAAGTTCTAGCTACCGCTGGTGATACCCATCTAGGTGGTGAAGATTTTGA 1598 Score = 93.3 bits (102), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||| | || Sbjct 1598 TCAAAATCTTCACCACCTAGATGGGTATCACCAGCGGTAGCTAGAACTTCAAACACACCT 1657 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCA 183788 || || ||| || || || ||||| | ||||||||||| | |||| Sbjct 1658 TCATCGATAGATAGAAGGGAGACATCGNAAGTACCACCACCAAGATCA 1705 >seq1221 Length=30703 Score = 98.7 bits (108), Expect = 3e-15 Identities = 195/282 (69%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || || || || || || ||||||| || || || ||||| Sbjct 10646 GCCGTCATCACCGTCCCGGCTTACTTCAACGACAACCAGCGTCAGGCCACCAAGGATGCC 10705 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||| | || | ||||| || | || ||||| ||||| ||||| || || ||| Sbjct 10706 GGTGCCATTTCCGGTCTTAATGTCCTTCGTATCATTAACGAACCTACTGCCGCTGCTATT 10765 Query 349730 GCATATGGGCTTGA-TAAAATGAGT-GACCAAGaaaaa-aaTATTCTTATTTTTGATTTA 349786 || || || |||| | ||| ||| || |||| | ||| | || || | ||| | Sbjct 10766 GCCTACGGTCTTGGGTCAAACAAGTCGAACAAGGAGCGTAATGTGCTGATCTACGATCTT 10825 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA-GTTAA 349845 |||||||||||||||||||| || || || | || | || | | | || | || || Sbjct 10826 GGTGGTGGTACTTTTGATGTGTCCCTCCTGA-ACATCCAGGGTGGCGTCTTCACCGTCAA 10884 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || || ||||||||||| ||||| ||||| ||||||| || Sbjct 10885 GGCTACCGCTGGTGATACTCATCTAGGTGGCCAAGATTTCGA 10926 >seq1336 Length=25880 Score = 96.9 bits (106), Expect = 1e-14 Identities = 188/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 206458 TATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGAAGTTCCATTT 206517 || || || || || || || |||| || ||| || | || ||||| || || ||||| Sbjct 5592 TAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTG 5651 Query 206518 GTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCCAATTCCTCCT 206577 || || ||| | | ||| || | | ||| ||||| || | |||||||| || Sbjct 5652 GTACCGGCAATGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCA 5711 Query 206578 GCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATCAACACTATCA 206637 ||| || ||||| |||||||| ||| | || | |||||| || |||| ||||||| Sbjct 5712 GCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCA 5771 Query 206638 CTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCCAGCATTAAAT 206697 || ||| | | || || || ||| | || || | || ||||||||||| || Sbjct 5772 TCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAAC 5831 Query 206698 AAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735 | ||||| | |||||| || || ||||| | ||||| Sbjct 5832 AGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACAT 5869 >seq1158 Length=32881 Score = 84.2 bits (92), Expect = 7e-11 Identities = 110/152 (72%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 377442 TAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGC 377501 ||| || |||| | ||||| |||||| | || |||||| || || |||| ||| | Sbjct 29953 TAAGATCTCTTTCAGCCGTGGAACACCAAGAGTGACATTC---TTCGACGCAATACCTGT 29897 Query 377502 AAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAAT 377561 |||||||| || || | || | ||| || | || || ||||||||||| || || | Sbjct 29896 GAAGTGGAAGGTGTTCAACGTCATTTGGGTGGCCGGTTCGCCAATTGACTGAGCAGCTAA 29837 Query 377562 AACGCCAACCATTTCTCCAGGATTGACAATAG 377593 ||| ||||||||||| || || || || |||| Sbjct 29836 AACACCAACCATTTCACCTGGGTTAACCATAG 29805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515220250427477