Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1336 255 6e-63 seq1008 125 8e-24 >seq1336 Length=25880 Score = 255 bits (282), Expect = 6e-63 Identities = 899/1395 (64%), Gaps = 28/1395 (2%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||| | |||||| |||||||| ||||| || |||| ||||| | ||| Sbjct 4568 GTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACT 4627 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||||||||||||||| || | || ||| || || | |||||| ||||||| | Sbjct 4628 GGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTC 4687 Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| ||| | |||||||| ||| | | || ||||||||| ||||| Sbjct 4688 CTTGAGGGTAGCCCAGTCCCAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAG 4747 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 || || | || | || || |||| | | || ||||| || || ||||| || | Sbjct 4748 AATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAAT 4807 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 || ||| | || || || ||||||| | ||| || || ||||||||||| Sbjct 4808 CTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTG 4867 Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTG 78887 || || | || | || || | | || ||| | |||| |||||| || ||||| Sbjct 4868 TCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTG 4927 Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTA 78947 ||| |||| | | || || ||||||||||||||||| || || ||| | | || || Sbjct 4928 GACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGCCTCAGGGACAGGATA 4987 Query 78948 AAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAA 79007 ||| |||||||| | |||||| || ||| || || | || ||||||| || Sbjct 4988 GTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAG 5047 Query 79008 TTTGGCGAAATCAAAATGATTTCCTT-TGAT-------GAAAGTCGGTAGGCACAGCGAT 79059 || |||||| | | ||||| | || ||| | ||||| || ||| Sbjct 5048 CTTTTGAAAATCATA--GCTTTCCGAGTTATAGTCCACGAAGGACGGTAAAGCCATGGAT 5105 Query 79060 GCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119 |||| |||||| || || || || || | ||| ||||| || ||||| | | Sbjct 5106 GCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGA 5165 Query 79120 TTAGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTT 79178 ||||| | || || || || | |||||||||||||||||| || | |||||| Sbjct 5166 TTAGAACTACGA-ATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTT 5224 Query 79179 GTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTC 79238 |||| |||| | || | || ||||| |||| || |||| | | | ||||| | Sbjct 5225 GTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAGCTT 5284 Query 79239 CCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTT 79298 | |||| | || | ||||||| || | ||| || ||| | | | Sbjct 5285 CTGGGCTTTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTC 5344 Query 79299 GAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA 79358 || | || || |||||||||| || || | ||||||| |||||||||||| ||| Sbjct 5345 AAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCA 5404 Query 79359 GTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAG 79418 | ||| ||||||||| | |||||| || || || ||||| ||||| |||||| Sbjct 5405 GCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAG 5464 Query 79419 GTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGAT 79478 ||| || ||| | ||||| | || |||||| ||||| || || || || | | Sbjct 5465 GTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATAC 5524 Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 || | ||||||||| || || || || || || | ||| || || || || || Sbjct 5525 ATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTG 5584 Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC-GTCGGCGA 79597 | |||||| ||||| ||||||||||| || || | |||||| |||||||| ||| || Sbjct 5585 ATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACG- 5643 Query 79598 CGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT---- 79653 ||| || || ||| || | || | || || | | ||| || ||| Sbjct 5644 TGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGA--TACGA--TGTACATTCAGG 5699 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || || || || | | |||||| || || || || || || || || |||||| Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCC 5759 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 || || || || ||||| |||||| ||||||| |||||||| || | || Sbjct 5760 TCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTT 5819 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || || ||||| || || || | || || |||||| | || || ||| || | ||| Sbjct 5820 CCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAG 5879 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 ||||| ||| | | ||||| || || || ||||| || ||||||| | | Sbjct 5880 GTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATG 5939 Query 79894 TACTGGGGCGTCTCG 79908 | ||| || ||||| Sbjct 5940 TGCTGAGGTCTCTCG 5954 Score = 239 bits (264), Expect = 5e-58 Identities = 913/1422 (64%), Gaps = 30/1422 (2%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| |||||| || | ||||||| || ||||| || || || ||||| | | Sbjct 5953 GAGAGACCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGACGATGTTGAG 5894 Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACC 19216 ||||| |||||| ||| |||| ||| || || | |||||| || || | || || Sbjct 5893 AAAGTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCTTCCCCTACA 5834 Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 || ||||| || || || | || |||||||| ||| ||| | || | ||||| Sbjct 5833 CTGTTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAA 5774 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 ||||| || ||||||||||| || || || || || || || || |||||| | Sbjct 5773 GATGATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATG 5714 Query 19337 TCCGGGGGTATCGGGATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATG 19394 | || || || || | | | | ||| |||||| | | || | || | Sbjct 5713 GCTGGCGGAATTGGCCTGAATGTACATCG--TATCCGTGCCACGGGCTCTTACATTGCCG 5656 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | || || || | | || |||||||| ||| | ||||||||||||||||| ||| Sbjct 5655 GTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCC 5596 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514 | |||||| | || || || ||||| |||| | || || || |||||||| || | Sbjct 5595 GCTACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGT 5536 Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574 ||||| |||| || | || ||||| || ||||| |||||| ||| | ||||| | | Sbjct 5535 GGCACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTC 5476 Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634 | ||| ||||||||| ||| | |||||||| || || |||||| | ||||||| Sbjct 5475 GTGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGA 5416 Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || ||| ||| |||||||||||| |||| || |||| || |||| ||||||| Sbjct 5415 AGAACGGCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACG 5356 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 | || | ||| | | | ||| || || | ||| |||| || | || | Sbjct 5355 GTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCGGCCGCCAGACGA 5296 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGC-CAGGTCGAGACCGGCACACCG 19813 | |||| | | ||||| | | | || | | || ||| ||||| || | || Sbjct 5295 TAAAAGCCCAGAAGCTCTGGTATGCCATTCT-AGAGGCTCAGACAGAGACTGGAAACCCC 5237 Query 19814 TACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873 | |||| |||||||||| ||| || |||| || ||||||||| | || | || Sbjct 5236 TTCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAACCTGGGTACAAT- 5178 Query 19874 AAGTCG-TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAG--CCGGACGAGACTGCC 19930 || | || || || || ||||| ||||| ||| | | | || || || ||| Sbjct 5177 TCGTAGTTCTAATCTCTGCACTGAGATCATTGAG--TACAGTGCTCCAGATGAAGTTGCT 5120 Query 19931 GTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT---CCTC------C 19981 || || || |||| ||| || | ||| | ||||| || || ||| | Sbjct 5119 GTTTGCAACTTGGCATCCATGGCTTTACCGTCCTTCGT---GGACTATAACTCGGAAAGC 5063 Query 19982 TTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTC 20041 | || ||| || || ||||||| |||| || || ||| |||||||| | ||| Sbjct 5062 TATGATTTTCAAAAGCTGCACGAGGTAACCCAAGTTGTTGTGCGCAATCTGAACAGAGTC 5003 Query 20042 ATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCG 20101 ||||| ||| || || | | ||| || || || ||||||||||| || Sbjct 5002 ATCGACGCAAACCACTATCCTGTCCCTGAGGCACGTAACAGCAACATGCGCCACCGCCCT 4943 Query 20102 ATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGAC 20161 || | |||| |||||||| || ||||| ||| | ||| || | | || || Sbjct 4942 ATTGGTCTCGGTGTCCAGGGTCTAGCCGATACCTTCCTTGCTCTCCGCATGCCTTTTGAA 4883 Query 20162 GATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTC 20221 ||| | || || ||||||||||| || || ||| || ||||||| || || | Sbjct 4882 TCGCCCGAAGCTCGACAGCTCAACAAGCAGATTTTTGAGACCATGTACCATGCCGCTTTG 4823 Query 20222 CTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCC 20281 | ||| || | || || || || || | ||| || | | |||| || || Sbjct 4822 ACTGCATCAATGGAGATTGCTAAGGAAGAAGGTACTTACTCTACTTACGAGGGCTCTCCT 4763 Query 20282 GCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC 20341 | || | || || || ||| ||||||||| |||||| ||| ||||| | Sbjct 4762 GTTTCTCAAGGCATTCTTCAGTATGACATGTGGAATGTCACTCCCTCTGATCTTTGGGAC 4703 Query 20342 ------GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCG 20395 ||||||||| ||||||| || || | |||||| | ||| | || Sbjct 4702 TGGGCTACCCTCAAGGAGCAGATCAAACAACATGGTGTACGCAACAGTCTCCTCATGGCT 4643 Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455 ||||||||||||||| ||| | ||||| |||| || ||||| |||||||| ||| Sbjct 4642 CCCATGCCGACCGCCAGTACCTCGCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTAC 4583 Query 20456 ACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 ||| | ||||| |||| |||||| | |||||||| ||| Sbjct 4582 ACGTCGAACATTTACTCTCGTCGTGTTTTAGCCGGTGAATTC 4541 >seq1008 Length=41606 Score = 125 bits (138), Expect = 8e-24 Identities = 310/455 (68%), Gaps = 18/455 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||||||| || ||||| || ||| ||||| ||||||||| || | ||| Sbjct 1958 TTTGCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTC 2017 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||| ||||||||||| |||||||| || ||||| ||||||| ||||| |||||| Sbjct 2018 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAG 2077 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || || || ||||| || ||||| || ||||| || | | | ||| ||| Sbjct 2078 CTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC-CTGTCTATTGTTTTCCCAC-- 2134 Query 60152 ATTGGAAAAATGCCCTTCCAAGGATATTC--ACAAG-ATTGTTCAGTGG--GCTTGTGAA 60206 ||| | || | || ||| || | || | ||| | | || || | || |||| Sbjct 2135 -TTGAAGAACCGGCCCAGCAAAGA-AGTCGTAGAAGCAGTTATC-GTCGATGC-CGTGAG 2190 Query 60207 G-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | | ||| || ||| | ||||| || || || ||| || | |||||| | || Sbjct 2191 GATCGAGCAAGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAA 2250 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT-CATGGCCCAGTTTGGAGAAG 60324 |||| |||||||||| |||| || || || || || | || | | ||||| || Sbjct 2251 CCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGC--TTTGGGCAAT 2308 Query 60325 GACCA-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || | | ||| || | ||||| ||||| | ||||||| ||| ||| | | || Sbjct 2309 GAGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGC 2368 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||| |||||||| || ||||| ||||| ||||| Sbjct 2369 AAGACAAACTTCTTCGAAAAGCGCGTCGGTGATTA 2403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548512739310960