Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 255 6e-63
seq1008 125 8e-24
>seq1336
Length=25880
Score = 255 bits (282), Expect = 6e-63
Identities = 899/1395 (64%), Gaps = 28/1395 (2%)
Strand=Plus/Plus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||| ||||| | |||||| |||||||| ||||| || |||| ||||| | |||
Sbjct 4568 GTAAATGTTCGACGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGCGAGGTACT 4627
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
||||||||||||||| || | || ||| || || | |||||| ||||||| |
Sbjct 4628 GGCGGTCGGCATGGGAGCCATGAGGAGACTGTTGCGTACACCATGTTGTTTGATCTGCTC 4687
Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| ||| | |||||||| ||| | | || ||||||||| |||||
Sbjct 4688 CTTGAGGGTAGCCCAGTCCCAAAGATCAGAGGGAGTGACATTCCACATGTCATACTGAAG 4747
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767
|| || | || | || || |||| | | || ||||| || || ||||| || |
Sbjct 4748 AATGCCTTGAGAAACAGGAGAGCCCTCGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAAT 4807
Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827
|| ||| | || || || ||||||| | ||| || || |||||||||||
Sbjct 4808 CTCCATTGATGCAGTCAAAGCGGCATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTG 4867
Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTG 78887
|| || | || | || || | | || ||| | |||| |||||| || |||||
Sbjct 4868 TCGAGCTTCGGGCGATTCAAAAGGCATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTG 4927
Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTA 78947
||| |||| | | || || ||||||||||||||||| || || ||| | | || ||
Sbjct 4928 GACACCGAGACCAATAGGGCGGTGGCGCATGTTGCTGTTACGTGCCTCAGGGACAGGATA 4987
Query 78948 AAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAA 79007
||| |||||||| | |||||| || ||| || || | || ||||||| ||
Sbjct 4988 GTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGCAG 5047
Query 79008 TTTGGCGAAATCAAAATGATTTCCTT-TGAT-------GAAAGTCGGTAGGCACAGCGAT 79059
|| |||||| | | ||||| | || ||| | ||||| || |||
Sbjct 5048 CTTTTGAAAATCATA--GCTTTCCGAGTTATAGTCCACGAAGGACGGTAAAGCCATGGAT 5105
Query 79060 GCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119
|||| |||||| || || || || || | ||| ||||| || ||||| | |
Sbjct 5106 GCCAAGTTGCAAACAGCAACTTCATCTGGAGCACTGTACTCAATGATCTCAGTGCAGAGA 5165
Query 79120 TTAGA-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTT 79178
||||| | || || || || | |||||||||||||||||| || | ||||||
Sbjct 5166 TTAGAACTACGA-ATTGTACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTGGTCCTT 5224
Query 79179 GTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTC 79238
|||| |||| | || | || ||||| |||| || |||| | | | ||||| |
Sbjct 5225 GTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGAGCTT 5284
Query 79239 CCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTT 79298
| |||| | || | ||||||| || | ||| || ||| | | |
Sbjct 5285 CTGGGCTTTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTC 5344
Query 79299 GAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA 79358
|| | || || |||||||||| || || | ||||||| |||||||||||| |||
Sbjct 5345 AAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCA 5404
Query 79359 GTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAG 79418
| ||| ||||||||| | |||||| || || || ||||| ||||| ||||||
Sbjct 5405 GCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAG 5464
Query 79419 GTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGAT 79478
||| || ||| | ||||| | || |||||| ||||| || || || || | |
Sbjct 5465 GTCACGAGCACGAACTTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATAC 5524
Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538
|| | ||||||||| || || || || || || | ||| || || || || ||
Sbjct 5525 ATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTG 5584
Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC-GTCGGCGA 79597
| |||||| ||||| ||||||||||| || || | |||||| |||||||| ||| ||
Sbjct 5585 ATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACG- 5643
Query 79598 CGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT---- 79653
||| || || ||| || | || | || || | | ||| || |||
Sbjct 5644 TGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGA--TACGA--TGTACATTCAGG 5699
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
|| || || || | | |||||| || || || || || || || || ||||||
Sbjct 5700 CCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCC 5759
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773
|| || || || ||||| |||||| ||||||| |||||||| || | ||
Sbjct 5760 TCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTT 5819
Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833
|| || ||||| || || || | || || |||||| | || || ||| || | |||
Sbjct 5820 CCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAG 5879
Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893
||||| ||| | | ||||| || || || ||||| || ||||||| | |
Sbjct 5880 GTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATG 5939
Query 79894 TACTGGGGCGTCTCG 79908
| ||| || |||||
Sbjct 5940 TGCTGAGGTCTCTCG 5954
Score = 239 bits (264), Expect = 5e-58
Identities = 913/1422 (64%), Gaps = 30/1422 (2%)
Strand=Plus/Minus
Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156
|||| |||||| || | ||||||| || ||||| || || || ||||| | |
Sbjct 5953 GAGAGACCTCAGCACATGATCATGCGTGTGGCGGTAGGTATTTGGGGAGACGATGTTGAG 5894
Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACC 19216
||||| |||||| ||| |||| ||| || || | |||||| || || | || ||
Sbjct 5893 AAAGTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCTTCCCCTACA 5834
Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276
|| ||||| || || || | || |||||||| ||| ||| | || | |||||
Sbjct 5833 CTGTTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAA 5774
Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336
||||| || ||||||||||| || || || || || || || || |||||| |
Sbjct 5773 GATGATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATG 5714
Query 19337 TCCGGGGGTATCGGGATCCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATG 19394
| || || || || | | | | ||| |||||| | | || | || |
Sbjct 5713 GCTGGCGGAATTGGCCTGAATGTACATCG--TATCCGTGCCACGGGCTCTTACATTGCCG 5656
Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454
| || || || | | || |||||||| ||| | ||||||||||||||||| |||
Sbjct 5655 GTACCAATGGCACGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCC 5596
Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514
| |||||| | || || || ||||| |||| | || || || |||||||| || |
Sbjct 5595 GCTACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGT 5536
Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574
||||| |||| || | || ||||| || ||||| |||||| ||| | ||||| | |
Sbjct 5535 GGCACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTC 5476
Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634
| ||| ||||||||| ||| | |||||||| || || |||||| | |||||||
Sbjct 5475 GTGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGA 5416
Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| ||| ||| |||||||||||| |||| || |||| || |||| |||||||
Sbjct 5415 AGAACGGCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACG 5356
Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754
| || | ||| | | | ||| || || | ||| |||| || | || |
Sbjct 5355 GTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCGGCCGCCAGACGA 5296
Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGC-CAGGTCGAGACCGGCACACCG 19813
| |||| | | ||||| | | | || | | || ||| ||||| || | ||
Sbjct 5295 TAAAAGCCCAGAAGCTCTGGTATGCCATTCT-AGAGGCTCAGACAGAGACTGGAAACCCC 5237
Query 19814 TACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873
| |||| |||||||||| ||| || |||| || ||||||||| | || | ||
Sbjct 5236 TTCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAACCTGGGTACAAT- 5178
Query 19874 AAGTCG-TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAG--CCGGACGAGACTGCC 19930
|| | || || || || ||||| ||||| ||| | | | || || || |||
Sbjct 5177 TCGTAGTTCTAATCTCTGCACTGAGATCATTGAG--TACAGTGCTCCAGATGAAGTTGCT 5120
Query 19931 GTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT---CCTC------C 19981
|| || || |||| ||| || | ||| | ||||| || || ||| |
Sbjct 5119 GTTTGCAACTTGGCATCCATGGCTTTACCGTCCTTCGT---GGACTATAACTCGGAAAGC 5063
Query 19982 TTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTC 20041
| || ||| || || ||||||| |||| || || ||| |||||||| | |||
Sbjct 5062 TATGATTTTCAAAAGCTGCACGAGGTAACCCAAGTTGTTGTGCGCAATCTGAACAGAGTC 5003
Query 20042 ATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCG 20101
||||| ||| || || | | ||| || || || ||||||||||| ||
Sbjct 5002 ATCGACGCAAACCACTATCCTGTCCCTGAGGCACGTAACAGCAACATGCGCCACCGCCCT 4943
Query 20102 ATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGAC 20161
|| | |||| |||||||| || ||||| ||| | ||| || | | || ||
Sbjct 4942 ATTGGTCTCGGTGTCCAGGGTCTAGCCGATACCTTCCTTGCTCTCCGCATGCCTTTTGAA 4883
Query 20162 GATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTC 20221
||| | || || ||||||||||| || || ||| || ||||||| || || |
Sbjct 4882 TCGCCCGAAGCTCGACAGCTCAACAAGCAGATTTTTGAGACCATGTACCATGCCGCTTTG 4823
Query 20222 CTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCC 20281
| ||| || | || || || || || | ||| || | | |||| || ||
Sbjct 4822 ACTGCATCAATGGAGATTGCTAAGGAAGAAGGTACTTACTCTACTTACGAGGGCTCTCCT 4763
Query 20282 GCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC 20341
| || | || || || ||| ||||||||| |||||| ||| ||||| |
Sbjct 4762 GTTTCTCAAGGCATTCTTCAGTATGACATGTGGAATGTCACTCCCTCTGATCTTTGGGAC 4703
Query 20342 ------GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCG 20395
||||||||| ||||||| || || | |||||| | ||| | ||
Sbjct 4702 TGGGCTACCCTCAAGGAGCAGATCAAACAACATGGTGTACGCAACAGTCTCCTCATGGCT 4643
Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455
||||||||||||||| ||| | ||||| |||| || ||||| |||||||| |||
Sbjct 4642 CCCATGCCGACCGCCAGTACCTCGCAGATTCTGGGCAATAACGAATGCTTCGAGCCCTAC 4583
Query 20456 ACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497
||| | ||||| |||| |||||| | |||||||| |||
Sbjct 4582 ACGTCGAACATTTACTCTCGTCGTGTTTTAGCCGGTGAATTC 4541
>seq1008
Length=41606
Score = 125 bits (138), Expect = 8e-24
Identities = 310/455 (68%), Gaps = 18/455 (4%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| |||||||| || ||||| || ||| ||||| ||||||||| || | |||
Sbjct 1958 TTTGCCCAACGTCTGATTGCTTTCGCTGCCGTTGAAGGTATCTTCTTCAGCGGTGCTTTC 2017
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|||| ||||||||||| |||||||| || ||||| ||||||| ||||| ||||||
Sbjct 2018 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTGACCTTCTCTAACGAG 2077
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151
|| || || || ||||| || ||||| || ||||| || | | | ||| |||
Sbjct 2078 CTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC-CTGTCTATTGTTTTCCCAC-- 2134
Query 60152 ATTGGAAAAATGCCCTTCCAAGGATATTC--ACAAG-ATTGTTCAGTGG--GCTTGTGAA 60206
||| | || | || ||| || | || | ||| | | || || | || ||||
Sbjct 2135 -TTGAAGAACCGGCCCAGCAAAGA-AGTCGTAGAAGCAGTTATC-GTCGATGC-CGTGAG 2190
Query 60207 G-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265
| | ||| || ||| | ||||| || || || ||| || | |||||| | ||
Sbjct 2191 GATCGAGCAAGAATTCCTGACAGAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAA 2250
Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT-CATGGCCCAGTTTGGAGAAG 60324
|||| |||||||||| |||| || || || || || | || | | ||||| ||
Sbjct 2251 CCTCATGAAGCAGTACATTGAGTTCGTGGCCGATCGTCTGCTTGTCGC--TTTGGGCAAT 2308
Query 60325 GACCA-ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383
|| | | ||| || | ||||| ||||| | ||||||| ||| ||| | | ||
Sbjct 2309 GAGAAGGTCTACCGCTCTACCAACCCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGC 2368
Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||||| |||||||| || ||||| ||||| |||||
Sbjct 2369 AAGACAAACTTCTTCGAAAAGCGCGTCGGTGATTA 2403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548512739310960
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