Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1336 221 1e-52 seq911 143 3e-29 seq1008 87.8 2e-12 >seq1336 Length=25880 Score = 221 bits (244), Expect = 1e-52 Identities = 480/707 (68%), Gaps = 10/707 (1%) Strand=Plus/Minus Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 |||| ||||| ||| || | ||| || || ||||| || || || | || || ||| Sbjct 5890 GTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCTTCCCCTACACTG 5831 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| ||||| || || ||||||||||| ||||||| |||| | ||||| ||| Sbjct 5830 TTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAAGAT 5771 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 || || || ||||| || || || || || ||||| || |||||| | | Sbjct 5770 GATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATGGCT 5711 Query 53417 GGTGGTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || || || | | | | ||| | ||||||| | ||| | || || | Sbjct 5710 GGCGGAATTGGCCTGAATGTACATCGTA--TCCGTGCCACGGGCTCTTACATTGCCGGTA 5653 Query 53475 CGAACGGCGTCGCCGA-TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 | || ||| || ||| ||| ||||| || ||| | ||||||||||||||||| ||||| Sbjct 5652 CCAATGGCA-CGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCCGC 5594 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 |||||| | || |||||| || || ||| | || || || |||||||| |||||| Sbjct 5593 TACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGTGG 5534 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||| | || | | ||||| || || ||||| ||| || ||| | || || | || Sbjct 5533 CACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTCG- 5475 Query 53654 TGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||| |||||||| || ||| || |||||||| || || |||||| || || ||||| Sbjct 5474 TGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGAA 5415 Query 53713 GGACGAGGAGTGGTAC-CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771 | ||| | || | || |||||||||||||||||||| | || || | |||||||| Sbjct 5414 GAACG-GCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACG 5356 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831 |||| |||||| | | | || || ||| | || | |||| ||| | ||| | Sbjct 5355 GTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCGGCCGCCAGACGA 5296 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 | || || | || | ||| |||| || || || ||| ||||| |||| || | Sbjct 5295 TAAAAGCCCAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAGACTGGAAACCCCT 5236 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| ||||||||| | ||| |||||||||||||||||| Sbjct 5235 TCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAAC 5189 >seq911 Length=48601 Score = 143 bits (158), Expect = 3e-29 Identities = 289/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| |||||||| |||| || | ||| || | |||||| |||||| | Sbjct 11735 CCAGTGCCGATACCATCTGCACCGTTCACTAGGACCATAGGGATGACAGGGGCGTAGACC 11676 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTC--CGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 | ||||| | | | ||||||||| ||||| | || || || | ||| | Sbjct 11675 TTTGGCTCAATTTTCTTACCGTCGTCGACGTGATG--CTCCAGATTCGGCTCATCAAGTG 11618 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||| ||| || | || | || |||||| |||||| |||| ||| |||| Sbjct 11617 AGGAGAAAATGCGTCGGGCGAATGGCGACAGACGAGTGTGAATGTATCGAGCGCTAGCAG 11558 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 |||| ||||| ||||| || | |||||| | ||| || || |||||| ||| | || Sbjct 11557 CATCTGAACCACCTGCAAGTCGAGAACCGAAGTTTCCGCTGGGTTCCAAGCAGTTTACGT 11498 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449 |||| | || ||||||||||| ||||| || ||| || ||| || | | || | Sbjct 11497 TGTTAGATCCAACAAAGTTTTGGGCCAAACCGATAATAGTCTGTTGCAGCGACACTTCGC 11438 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC-- 117507 | ||||| || || || ||||| | |||||||| || | || | |||||| | || Sbjct 11437 CGTGGTGGTAAGCGGTTTGCTCAGATACGTAGCCAGCTAACTCAATGACCTTCTTATCCT 11378 Query 117508 TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACC 117567 ||| || || || ||| | ||||||||| || || || || |||| ||||||| ||| Sbjct 11377 TGA-GT-AGATTGCGCTTCAAGCAGGCATAGATGACTTTTCGTTGACCAGGCTTCAAACC 11320 Query 117568 ATC 117570 || Sbjct 11319 GTC 11317 >seq1008 Length=41606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 333/504 (66%), Gaps = 29/504 (6%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||||||||| |||||||| || ||||| ||||| || | | ||| ||||||||||| Sbjct 2403 TAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTCCATG 2344 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577 | ||||| ||||| | | | ||| | |||||| |||||| | | || | | Sbjct 2343 AAATCGAACGGGTTGGTAGAGCGGTAGA---CCTTCTCATTGCCCAAA--GCGACAAGCA 2289 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 | ||||| ||||| || | |||||||||| |||| |||| ||| |||| || Sbjct 2288 GACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAGAC 2229 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAA- 74694 ||| || || ||||| || | || || ||| | | | || | ||| | || || Sbjct 2228 CGCAAGGTAGAGCCTCTGTCAGGAATTCTTGCTCGATC-CTCACG-GCATCGACGATAAC 2171 Query 74695 -TCTTGT--GAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACG 74750 ||| | || | |||||| || | || | ||| ||| || | || | || | Sbjct 2170 TGCTTCTACGACT-TCTTTGCTGGGCCGGTT---CTTCAAGTGGGAAAACAATAGACA-G 2116 Query 74751 GCAAACTC-CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 ||||| || || | || ||||| || | || | || || || || | ||||| Sbjct 2115 GCAAAGTCGGTGTGGAGA-CCTTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGGCC 2057 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| || ||||||||||| | ||| ||||| | ||| | ||| ||||||||||| Sbjct 2056 GGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTGAAGAAGAT 1997 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG-GA--AGTCAT 74926 ||||| || || || || | || ||||| || || | | || | || || || Sbjct 1996 ACCTTCAACGGCAGCGAAAGCAATCAGACGTTGGGCAAAAGTCGAATTGCGATCAGCAAT 1937 Query 74927 CCAAGTCTGAGCCCATTCAGCTTT 74950 ||| | ||||||| ||||| || Sbjct 1936 CCACTTTAGAGCCCAGTCAGCCTT 1913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203968088200