Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1336 221 1e-52
seq911 143 3e-29
seq1008 87.8 2e-12
>seq1336
Length=25880
Score = 221 bits (244), Expect = 1e-52
Identities = 480/707 (68%), Gaps = 10/707 (1%)
Strand=Plus/Minus
Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296
|||| ||||| ||| || | ||| || || ||||| || || || | || || |||
Sbjct 5890 GTCCTCGAGACCTACAACCTCATGTCCCTCAAATACTTCACCCATGCTTCCCCTACACTG 5831
Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356
||||| ||||| || || ||||||||||| ||||||| |||| | ||||| |||
Sbjct 5830 TTCAATGCTGGAACCCCGCAGCCTCAGATGTCTTCCTGCTTCTTGGTCGACATGAAAGAT 5771
Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416
|| || || ||||| || || || || || ||||| || |||||| | |
Sbjct 5770 GATAGTATTGAGGGCATTTATGACACCCTTAAAACATGTGCTATGATTTCCAAGATGGCT 5711
Query 53417 GGTGGTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474
|| || || || | | | | ||| | ||||||| | ||| | || || |
Sbjct 5710 GGCGGAATTGGCCTGAATGTACATCGTA--TCCGTGCCACGGGCTCTTACATTGCCGGTA 5653
Query 53475 CGAACGGCGTCGCCGA-TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533
| || ||| || ||| ||| ||||| || ||| | ||||||||||||||||| |||||
Sbjct 5652 CCAATGGCA-CGTCGAATGGCATCGTCCCCATGTTACGCGTCTTCAACAACACCGCCCGC 5594
Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593
|||||| | || |||||| || || ||| | || || || |||||||| ||||||
Sbjct 5593 TACGTCGATCAAGGTGGTAATAAACGACCGGGCGCTTTTGCTATTTACCTCGAACCGTGG 5534
Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653
||| | || | | ||||| || || ||||| ||| || ||| | || || | ||
Sbjct 5533 CACTCGGATGTATTTGAGTTCCTGGATCTGCGAAAGAACCACGGTAAAGAGGAAGTTCG- 5475
Query 53654 TGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712
||| |||||||| || ||| || |||||||| || || |||||| || || |||||
Sbjct 5474 TGCTCGTGACCTCTTCCTAGCCCTTTGGATTCCTGATCTGTTCATGAAACGAGTTGAGAA 5415
Query 53713 GGACGAGGAGTGGTAC-CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771
| ||| | || | || |||||||||||||||||||| | || || | ||||||||
Sbjct 5414 GAACG-GCAGCTGGACACTGATGTGCCCGAACGAGTGTGCTGGTCTTGCCGATGTCTACG 5356
Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831
|||| |||||| | | | || || ||| | || | |||| ||| | ||| |
Sbjct 5355 GTGATGAGTTTGAAGCCCTCTACGAGAAGTATGAAGCTGAGGGTCGCGGCCGCCAGACGA 5296
Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891
| || || | || | ||| |||| || || || ||| ||||| |||| || |
Sbjct 5295 TAAAAGCCCAGAAGCTCTGGTATGCCATTCTAGAGGCTCAGACAGAGACTGGAAACCCCT 5236
Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||| ||||||||| | ||| ||||||||||||||||||
Sbjct 5235 TCATGCTCTACAAGGACCACGCCAATCGCAAGAGCAACCAGAAGAAC 5189
>seq911
Length=48601
Score = 143 bits (158), Expect = 3e-29
Identities = 289/423 (68%), Gaps = 8/423 (2%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| |||||||| |||| || | ||| || | |||||| |||||| |
Sbjct 11735 CCAGTGCCGATACCATCTGCACCGTTCACTAGGACCATAGGGATGACAGGGGCGTAGACC 11676
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTC--CGTGACGTACTTGAGCACCGCATTGTCACTCG 117269
| ||||| | | | ||||||||| ||||| | || || || | ||| |
Sbjct 11675 TTTGGCTCAATTTTCTTACCGTCGTCGACGTGATG--CTCCAGATTCGGCTCATCAAGTG 11618
Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329
||| ||| || | || | || |||||| |||||| |||| ||| ||||
Sbjct 11617 AGGAGAAAATGCGTCGGGCGAATGGCGACAGACGAGTGTGAATGTATCGAGCGCTAGCAG 11558
Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389
|||| ||||| ||||| || | |||||| | ||| || || |||||| ||| | ||
Sbjct 11557 CATCTGAACCACCTGCAAGTCGAGAACCGAAGTTTCCGCTGGGTTCCAAGCAGTTTACGT 11498
Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCAC 117449
|||| | || ||||||||||| ||||| || ||| || ||| || | | || |
Sbjct 11497 TGTTAGATCCAACAAAGTTTTGGGCCAAACCGATAATAGTCTGTTGCAGCGACACTTCGC 11438
Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC-- 117507
| ||||| || || || ||||| | |||||||| || | || | |||||| | ||
Sbjct 11437 CGTGGTGGTAAGCGGTTTGCTCAGATACGTAGCCAGCTAACTCAATGACCTTCTTATCCT 11378
Query 117508 TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACC 117567
||| || || || ||| | ||||||||| || || || || |||| ||||||| |||
Sbjct 11377 TGA-GT-AGATTGCGCTTCAAGCAGGCATAGATGACTTTTCGTTGACCAGGCTTCAAACC 11320
Query 117568 ATC 117570
||
Sbjct 11319 GTC 11317
>seq1008
Length=41606
Score = 87.8 bits (96), Expect = 2e-12
Identities = 333/504 (66%), Gaps = 29/504 (6%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||||||||| |||||||| || ||||| ||||| || | | ||| |||||||||||
Sbjct 2403 TAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACCGAGCGAAATGTTCTCCATG 2344
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577
| ||||| ||||| | | | ||| | |||||| |||||| | | || | |
Sbjct 2343 AAATCGAACGGGTTGGTAGAGCGGTAGA---CCTTCTCATTGCCCAAA--GCGACAAGCA 2289
Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637
| ||||| ||||| || | |||||||||| |||| |||| ||| |||| ||
Sbjct 2288 GACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATTCATACCGAGCAGAC 2229
Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAA- 74694
||| || || ||||| || | || || ||| | | | || | ||| | || ||
Sbjct 2228 CGCAAGGTAGAGCCTCTGTCAGGAATTCTTGCTCGATC-CTCACG-GCATCGACGATAAC 2171
Query 74695 -TCTTGT--GAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACG 74750
||| | || | |||||| || | || | ||| ||| || | || | || |
Sbjct 2170 TGCTTCTACGACT-TCTTTGCTGGGCCGGTT---CTTCAAGTGGGAAAACAATAGACA-G 2116
Query 74751 GCAAACTC-CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
||||| || || | || ||||| || | || | || || || || | |||||
Sbjct 2115 GCAAAGTCGGTGTGGAGA-CCTTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGGCC 2057
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869
||||| || ||||||||||| | ||| ||||| | ||| | ||| |||||||||||
Sbjct 2056 GGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTGAAGAAGAT 1997
Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG-GA--AGTCAT 74926
||||| || || || || | || ||||| || || | | || | || || ||
Sbjct 1996 ACCTTCAACGGCAGCGAAAGCAATCAGACGTTGGGCAAAAGTCGAATTGCGATCAGCAAT 1937
Query 74927 CCAAGTCTGAGCCCATTCAGCTTT 74950
||| | ||||||| ||||| ||
Sbjct 1936 CCACTTTAGAGCCCAGTCAGCCTT 1913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547203968088200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |