Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1336 226 3e-54 seq1001 163 3e-35 seq1413 154 2e-32 seq1368 129 7e-25 >seq1336 Length=25880 Score = 226 bits (250), Expect = 3e-54 Identities = 689/1051 (66%), Gaps = 29/1051 (3%) Strand=Plus/Plus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GC 80783 || || || ||||| || |||| | || |||||||||||| |||| | | || || Sbjct 4914 TCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGCGCATGTT-GCTGTTACGTGC 4972 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 ||| || | || || ||| |||||||| | |||||| ||||| |||||| | Sbjct 4973 CTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCAGATTGCGCACAACAACTTG 5032 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCC--------TTCACAAATGCC 80895 || || || || || || ||||| || || | || || | ||| || | | Sbjct 5033 GGTTACCTCGTGCAGCTTTTGAAAATC--ATAGCTTTCCGAGTTATAGTCCACGAAGGAC 5090 Query 80896 GG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTC 80951 || || || || ||| |||| ||||| || || || || || |||| ||||| ||| Sbjct 5091 GGTAAAGC-CATGGATGCCAAGTTGCAAACAGCAACTTCATCTGGAGCA-CTGTA--CTC 5146 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | ||| || ||||| | ||||||| ||||||||||||||| |||||||| ||| Sbjct 5147 AATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCCAGGTTCTTCTGGTTGCTCTT 5206 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 | ||| |||||||||| |||| | ||| | || ||||| ||| | || || Sbjct 5207 GCGATTGGCGTGGTCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCTGTCTGAGCCTCTAG 5266 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||||| | ||| | || | || || | | || |||| || || || |||| Sbjct 5267 AATGGCATACCAGAGCTTCTGGGCTTTTATCGTCTGGCGGCCGCGACCCTCAGCTTCATA 5326 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 ||| |||| | || |||| |||||| | || | || | | |||||||| Sbjct 5327 CTTCTCGTAGAGGGCTTCAAACTCATCACCGTAGACATCGGCAAGACCAGCACACTCGTT 5386 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 ||||||||||| |||| | || ||||| || |||||||| ||||| || Sbjct 5387 CGGGCACATCAGTGTCCAGCTGCCGTTCTTCTCAACTCGTTTCATGAACAGATCAGGAAT 5446 Query 81252 CCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310 ||| ||||| ||| ||||| || ||| || | ||||| | ||| ||||| |||| Sbjct 5447 CCAAAGGGCTAGGAAGAGGTCACGAGCA-CGAACTTCCTCTTTACCGTGGTTCTTTCGCA 5505 Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCT 81370 || || || || | | |||| ||||| || || || || | || | | ||| Sbjct 5506 GATCCAGGAACTCAAATACATCCGAGTGCCACGGTTCGAGGTAAATAGCAAAAGCGCCCG 5565 Query 81371 TGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAG 81427 || | ||||| || | |||||| ||||| || ||| || || || ||||| | Sbjct 5566 GTCGTTTATTACCACCTTGATCGACGTAGCGGGCGGTGTTGTTGAAGACGCGTAACATGG 5625 Query 81428 GGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--C 81485 ||| ||| |||| ||| || || ||||| | || || ||| |||| || | | Sbjct 5626 GGACGATGCCATTCGACGTGCCATTGGTACCGGCAATGTAAGAGCCCGTGGCACGGATAC 5685 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCAT 81545 || ||| | | || || || || | | ||| |||||| |||||| || | Sbjct 5686 GATGTACATTCA--GGCCAATTCCGCCAGCCATCTTGGAAATCATAGCACATGTTTTAAG 5743 Query 81546 GGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACAT 81605 ||| |||||||| ||||| || ||||| | ||||||||| | |||||| ||| ||||| Sbjct 5744 GGTGTCATAAATGCCCTCAATACTATCATCTTTCATGTCGACCAAGAAGCAGGAAGACAT 5803 Query 81606 CTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 |||||| | || |||||||||||||| |||| || || |||| || | Sbjct 5804 CTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGGAAGCATGGGTGAAGTATTTGAG 5863 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725 ||||| |||| ||||| || ||| || |||||| || |||||| | || Sbjct 5864 GGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACATCGTCTCCCCAAATACCTACCGC 5923 Query 81726 TACACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||||| | ||||| ||| || ||||| Sbjct 5924 CACACGCATGATCATGTGCTGAGGTCTCTCG 5954 >seq1001 Length=42108 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 35381 ATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 35440 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 35441 AGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 35500 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || || || || ||||| |||||||| | |||||||| | ||||| Sbjct 35501 CAGCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTAC 35560 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||| || || || || ||||||| || ||||| Sbjct 35561 AACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGG 35610 >seq1413 Length=23416 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || |||||||| || || | ||||| ||||| Sbjct 20012 ATCATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCT 19953 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || ||||||||| Sbjct 19952 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGAC 19893 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| ||||| |||||||| || |||| || ||| | | ||||| Sbjct 19892 CAGCAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTAC 19833 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||| || || || |||||||| || ||||| Sbjct 19832 AACATCCAGAAGGAGAGCACTCTCCACCTGGTATTGCGTCTGCGAGGTGG 19783 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || || | || || || || Sbjct 19270 ATGCAGATCTTCGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAATCGTCA 19211 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| || |||||||||||||| || ||||||||||||||| Sbjct 19210 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 19151 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||||||||| || || |||| ||| || || ||| || || || Sbjct 19150 CAGCGCCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGAACTCTGAGC-GATTACAA 19092 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| || ||||| || ||||| | ||||| || || || || Sbjct 19091 TATCCAGAAGGAGTCTACTCTCCACCTAGTGCTCCGTCTCCGTGGCGGTCA 19041 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || || ||||| || || ||||||||||| || || | || | Sbjct 19714 GTCAAGACCCTGACTGGAAAGACGATCACACTTGAGGTTGAATCTTCGGACACTATCGAC 19655 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || ||||||||||| ||||| || || || ||||||||||| | ||| Sbjct 19654 AACGTCAAGTCGAAGATTCAGGACAAAGAGGGCATCCCCCCCGACCAGCAGCGCTTGATT 19595 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| |||||||| | || || || ||||| || |||| ||||| Sbjct 19594 TTTGCCGGAAAGCAGCTCGAGGACGGCCGAACACTCAGTGACTACAACATCCAGAAGGAG 19535 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || |||| ||||| || || Sbjct 19534 AGCACCCTCCACCTTGTGCTGCGCCTTCGTGGCGG 19500 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| |||||||| || || || || Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| || || || |||||||| || || ||||| || || Sbjct 19438 GACACCATCGACAACGTAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAA 19379 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| || ||||| | || || ||| ||||| || Sbjct 19378 CAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAAC 19319 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || | || | ||| | || ||||| Sbjct 19318 ATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272 >seq1368 Length=24850 Score = 129 bits (142), Expect = 7e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| ||||| |||||||| || || |||||||| || || || ||||| ||||| | Sbjct 8079 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 8138 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||| | ||| ||||| || || ||||||||||||||||| || || || |||| Sbjct 8139 ACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAGC 8198 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 ||||||| || || || || ||||| || ||||| | || ||||| | ||||| || Sbjct 8199 AGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACA 8258 Query 27587 TCCAAAAGG 27595 |||| |||| Sbjct 8259 TCCAGAAGG 8267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297860300080