Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq948 95.1 1e-14 >seq948 Length=99277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 29837 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896 || || || || || ||||| | |||||||||| | || || | || || | || Sbjct 84746 GTTGGGAACGGCCTTGGCTCTCGCTCGAGCTGAATTTTGAGTGCATCGACATGGTCGCAA 84805 Query 29897 TAGACGTGAGCGTCTCCCAGG--TTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29954 |||||||| || || |||| | ||||| || || || || | | | || ||||| Sbjct 84806 TAGACGTGTGCATCGCCCATGACTTGTGTT-AAGCTG-CCAGGAACCAACTCGCAGACGT 84863 Query 29955 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 30014 | || | ||||| ||||| || | |||||||||||||| || || || ||||| |||| Sbjct 84864 GTGCAAGCATGTGGGTGAGCAGCGCATAGCTGGCGATGTTGAACGGAACGCCGAGACCCA 84923 Query 30015 TGTCCCCCGACCTCTGGTAGAGCTGACA 30042 |||| | |||| |||||| |||||||| Sbjct 84924 TGTCGCAGGACCGCTGGTACAGCTGACA 84951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 234/351 (67%), Gaps = 14/351 (4%) Strand=Plus/Plus Query 30083 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30142 |||||||| ||||| ||||| || || || ||||| |||| | ||||||| Sbjct 85040 TGGCACGGCGGAAGGGCCATCTTCTTCAGATCAGCCGGATTCCATGCGCTGAGGATGATG 85099 Query 30143 CGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCA-GCTGATCCAC 30198 || | || | || ||||||| | || | ||| || ||| ||||||| || Sbjct 85100 CGGCGATCATAGGGATTGTTCCGCAGCTTGTGAATCAC----TTCAGCAAGCTGATCAAC 85155 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 ||| | || | |||||||| | || ||| ||| || || |||||||| | ||| || Sbjct 85156 GCCCCTGCCTGTGTAGTCTGTCTTCGCATCCACGTATTCGGCGCCGAAATGTCGCCATTG 85215 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC--TGTGCTCGAAGCCCCTCTTGTCC 30316 ||| ||||| || || || || || || |||| | |||| | | ||| ||||| Sbjct 85216 GAATCCGTAGACAGGGCCAAGATCGCCGACTTCACGATGTGATAG--GCCGACGCTGTCC 85273 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 | || |||| || ||||| ||||||||||||| ||||| ||| || || | | Sbjct 85274 AGGAATTCTCGTGATCCGTTACCGTCCCAGATCTTAACCCCGGCCTCCGACAGTGTTGTA 85333 Query 30377 GAGTTTGT-GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 || || |||||| || ||||| || ||||| |||| ||||| || Sbjct 85334 GACGACGTATTCCCCTCT-ACAAACCAAAGTAGCTCGGCCACAACGGCTTT 85383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301689593828