Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 98.7 6e-16
seq1001 91.5 9e-14
>seq1413
Length=23416
Score = 98.7 bits (108), Expect = 6e-16
Identities = 165/237 (70%), Gaps = 10/237 (4%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| |||||||| |||| ||||||||||||||||| || ||||| || || ||
Sbjct 19782 GCCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 19841
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || || | ||||| ||||| || || || || || || || || ||||| || ||
Sbjct 19842 CAAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGG 19901
Query 34599 CACTCCCTCCTTGTCTGTGATCTT----TTG-TTTTAACGATAAAATTGTGTCTTCGCTC 34653
| ||||||||||| ||||| ||| || ||||| ||||| |
Sbjct 19902 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATA-----GTGTCCGAAGAC 19956
Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| |||| ||| || || || || || | || || || || ||||||||| ||
Sbjct 19957 TCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATGATG 20013
Score = 95.1 bits (104), Expect = 8e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | ||| |||| ||| | ||||| ||||||||||| || ||||| || ||
Sbjct 19499 GCCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACT 19558
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|||||||| |||| || || || || |||||||| || || ||||| ||||| || ||
Sbjct 19559 GAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGG 19618
Query 34599 CACTCCCTCCTTGTC 34613
| ||||| |||||
Sbjct 19619 GATGCCCTCTTTGTC 19633
>seq1001
Length=42108
Score = 91.5 bits (100), Expect = 9e-14
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||| | ||||| ||||||||||| || ||||| || || || || || ||
Sbjct 35601 AGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 35542
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || | ||| || ||||| || || | ||||||
Sbjct 35541 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCC 35482
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666
||||| |||| || | || || | || ||||| ||| |||||| || | ||
Sbjct 35481 TTGTCCTGGATC-TTGGACTTGACATTGTCGATGGTGTCGCTCG-ACTCCACCTCGAGGG 35424
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || || || || || | || || || || |||||||||
Sbjct 35423 TGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 35383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314722852885847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |