Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 161 2e-34
seq1368 152 1e-31
seq1001 150 4e-31
>seq1413
Length=23416
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| ||||| || ||||| || ||||| || || | ||||||
Sbjct 19059 AGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCGACCATCT 19118
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||||||||| || ||||| ||||||| ||||||||||||
Sbjct 19119 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 19178
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| |||||||| || ||||| || || ||| || || | ||||| |||
Sbjct 19179 TGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTC 19238
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | ||||| || || | ||||||
Sbjct 19239 TTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || || ||||| || || || || | || ||
Sbjct 19287 AGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCC 19346
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || ||||||||||| || ||||| || ||||| | |||||||||||
Sbjct 19347 TCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCT 19406
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || ||| || || ||||| ||||||
Sbjct 19407 TGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTC 19466
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| ||||| || || | |||||
Sbjct 19467 TTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| ||||| |||||| ||| || |||||||| || || | | ||| | |||||||||
Sbjct 19801 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 19860
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
|| ||||| || ||||| || | ||||| ||||| ||||| | || |||||||||||
Sbjct 19861 AGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGA 19920
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || || || ||||| ||||| || || ||||| | ||||| |||||
Sbjct 19921 ATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTG 19980
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| || || | ||||||
Sbjct 19981 CCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || |||||||| || ||| ||| || |||||||| || || || ||
Sbjct 19505 ACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTGAGTGT 19564
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || || || || | ||| || ||||| || || | ||
Sbjct 19565 TCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGGATGCC 19624
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| ||
Sbjct 19625 CTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAG 19684
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||||||||||| || || ||||| ||
Sbjct 19685 TGTGATCGTCTTTCCAGTCAGGGTCTTGAC 19714
>seq1368
Length=24850
Score = 152 bits (168), Expect = 1e-31
Identities = 146/187 (78%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| |||||||||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || || || || || | ||| ||||||||||||||||| ||||| || |||
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|||||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086
Query 211107 ACCTGCA 211113
| |||||
Sbjct 8085 ATCTGCA 8079
>seq1001
Length=42108
Score = 150 bits (166), Expect = 4e-31
Identities = 163/215 (76%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||| ||| || |||||||| || || | ||||| | || ||
Sbjct 35595 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 35536
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || ||||| ||||| || || | || |||||||||
Sbjct 35535 TCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 35476
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||||||||| ||| || |||||||| |||||
Sbjct 35475 TGGATCTTGGACTTGACATTGTCGATGGTGTC---GCTCGACTCCACCTCGAGGGTGATA 35419
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| ||||| || || | ||||||
Sbjct 35418 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159125875974035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |