Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1413 116 3e-21 seq1368 91.5 1e-13 >seq1413 Length=23416 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || || | Sbjct 19498 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCA 19439 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || || ||||| |||||| | || || |||||| Sbjct 19438 GACACCATCGACAACGTAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAA 19379 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || ||||| |||| || ||| || |||| |||||| Sbjct 19378 CAGCGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAAC 19319 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || |||| || || | | ||||| || || Sbjct 19318 ATTCAGAAGGAGTCTACGCTACACTTGGTGCTTCGTTTGCGTGGTGG 19272 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| || || || ||||| | || || || || || Sbjct 20009 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 19950 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | || ||||| || || | || ||||| || Sbjct 19949 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATCCCTCCAGACCA 19891 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || || || || ||||||||||| | ||||| || || ||||| Sbjct 19890 GCAACGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCACCTTGTCTGACTACAA 19831 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 19830 CATCCAGAAGGAG 19818 >seq1368 Length=24850 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| | ||||||| ||||| || ||||||||||| || || ||||| ||||| || || | Sbjct 8073 TTACAGTGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 8132 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 || | ||||| | || ||| | || | || || ||||| || || | || || Sbjct 8133 CCTCCGACACCATCGACAATGTGAAGA-GCAAGATCCAGGACAAGGAGGGAATCCCCCCG 8191 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 ||||| |||||| | || || |||||||| || || || |||| || || | ||| Sbjct 8192 GATCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGAC 8251 Query 23785 TACAACATACAAAA 23798 |||||||| || || Sbjct 8252 TACAACATCCAGAA 8265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002353813572