Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq948 96.9 3e-15 >seq948 Length=99277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 27103 GTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGG 27162 || || || || || ||||| | |||||||||| | || || | || || || || Sbjct 84746 GTTGGGAACGGCCTTGGCTCTCGCTCGAGCTGAATTTTGAGTGCATCGACATGGTCGCAA 84805 Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 |||||||| || || |||| | || | || || || || | | | || |||||| Sbjct 84806 TAGACGTGTGCATCGCCCATGACTTGTGTTAAGCTG-CCAGGAACCAACTCGCAGACGTG 84864 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 || | ||||| ||||| || | |||||||||||||| || || || ||||| ||||| Sbjct 84865 TGCAAGCATGTGGGTGAGCAGCGCATAGCTGGCGATGTTGAACGGAACGCCGAGACCCAT 84924 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||| | |||| |||||| |||||||| Sbjct 84925 GTCGCAGGACCGCTGGTACAGCTGACA 84951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 234/351 (67%), Gaps = 14/351 (4%) Strand=Plus/Plus Query 27349 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 27408 |||||||| ||||| ||||| || || || ||||| |||| | ||||||| Sbjct 85040 TGGCACGGCGGAAGGGCCATCTTCTTCAGATCAGCCGGATTCCATGCGCTGAGGATGATG 85099 Query 27409 CGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCA-GCTGATCCAC 27464 || | || | || ||||||| | || | ||| || ||| ||||||| || Sbjct 85100 CGGCGATCATAGGGATTGTTCCGCAGCTTGTGAATCAC----TTCAGCAAGCTGATCAAC 85155 Query 27465 CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTG 27524 ||| | || | ||||||| | || ||| ||| || || |||||||| | |||||| Sbjct 85156 GCCCCTGCCTGTGTAGTCTGTCTTCGCATCCACGTATTCGGCGCCGAAATGTCGCCATTG 85215 Query 27525 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC--TGTGCTCGAAGCCCCTCTTGTCC 27582 ||| ||||| || || || || || || |||| | |||| | | ||| ||||| Sbjct 85216 GAATCCGTAGACAGGGCCAAGATCGCCGACTTCACGATGTGATAG--GCCGACGCTGTCC 85273 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 27642 | || |||| || ||||| ||||||||||||| ||||| ||| || || | | Sbjct 85274 AGGAATTCTCGTGATCCGTTACCGTCCCAGATCTTAACCCCGGCCTCCGACAGTGTTGTA 85333 Query 27643 GAGTTTGT-GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 || || |||||| || ||||| || ||||| |||| ||||| || Sbjct 85334 GACGACGTATTCCCCTCT-ACAAACCAAAGTAGCTCGGCCACAACGGCTTT 85383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499278573929