Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1336 286 5e-72 seq1008 96.9 5e-15 >seq1336 Length=25880 Score = 286 bits (316), Expect = 5e-72 Identities = 1197/1864 (64%), Gaps = 54/1864 (3%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || ||||| || || || | || ||| ||||| |||||||| Sbjct 4178 TTCTTGATCAACCGTGAATTGAATAGGTTGAGCGGCAGCTTGTGTTCGTAGGTAGTACAT 4237 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCC-GTAGAAATGCATGCTTGTCAGTTTGGAATAAC 76887 ||||| || ||||| || |||| || ||| || |||||||| || | ||| Sbjct 4238 GCCAGTCTTCAGACCAAGCTTCCACCCAGTA-AAGTGCATGCTCGTGATCTTGCCCATTG 4296 Query 76888 TAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAG 76947 | || || ||||||||||| | || || ||||| |||||||| || | ||| | Sbjct 4297 TGGGCTCCCTCATATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGG 4356 Query 76948 CCGCCATTTTTA-TAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTG 77006 | ||||||| | || || || | ||| ||||||||| | ||| ||| | | |||| Sbjct 4357 CAGCCATTTGCACTACTGTTCGCT-GAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTG 4415 Query 77007 ATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTC 77063 | || | |||| | | | || | |||| ||| ||||| || | || || ||| Sbjct 4416 ACTTCCGCCGGAATGCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTC 4475 Query 77064 TTTATATCATCATTCCACAATTTCCTC--TCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 || |||| |||| ||| | ||| || | | | | || || ||||| | Sbjct 4476 TTCATATTATCAGACCATAGA--CCTAGATCGACCAGATCCTTCAGAAGCCATGGATTGA 4533 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | ||| ||||| || | || || | ||||| |||||| || || || || || | Sbjct 4534 CGACTTGGAATTCACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGA 4593 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 |||| || || |||| ||| || | ||| || || ||||| || |||| | | Sbjct 4594 AGCATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGA 4653 Query 77242 AACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGAT 77301 ||| || | | ||||||| | |||| | || || || ||| |||||||||| Sbjct 4654 GACTGTTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGAT 4713 Query 77302 CTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCAT 77361 | || || |||| ||| | || || || ||||| || | | | || || || | Sbjct 4714 CAGAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCT 4773 Query 77362 TATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTC--GCTTCCAATGCTCC 77419 || || |||| |||||| | ||| | || | | | || ||| || | Sbjct 4774 CGTAAGTAGAGTAAGTACCTTCTTCCTTAGCAA--TCTCCATTGATGCAGTCAAAGCGGC 4831 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 | || || || || ||||||| ||| ||||| | | | ||||| ||||| || Sbjct 4832 ATGGTACATGGTCTCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGG 4891 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | | | || |||| ||| |||| ||||| || || | ||||||||| | || Sbjct 4892 CATGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTG 4951 Query 77540 TCTCTTATTGGAAATTTTA---GCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 | | | ||| | ||| || || || | |||||| | || ||| || | | | Sbjct 4952 GCGCATGTTGC---TGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCT 5008 Query 77597 ATTGAGATTTCTAACAACTACTT---TAACCACGTCCTTTAGTTTAAGAAAATCAAATCT 77653 || ||||| | ||||| |||| | ||| ||| | || || |||||||| | || Sbjct 5009 GTTCAGATTGCGCACAACAACTTGGGTTACCTCGTGC---AGCTTTTGAAAATCATAGCT 5065 Query 77654 TCC--ATCTATA----ACAAAC-ATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTA 77706 | | | |||| || || | | | ||||| || ||||| | || ||||| || | Sbjct 5066 TTCCGAGTTATAGTCCACGAAGGACGGT-AAAGCCATGGATGCCAAGTTGCAAACAGCAA 5124 Query 77707 CCTCATT---AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 | |||| ||| || || | || ||||| || || |||||| || || | Sbjct 5125 CTTCATCTGGAGCACTG---TACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTG 5181 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTG-CATGAGTCCTTATAAAGAATAAACGGA 77822 | ||||| || | ||||||||||| |||| | || |||||| || || || || || Sbjct 5182 TACCCAGGTTCTTCTGGTTGCTCTTGCGATTGGCGTG-GTCCTTGTAGAGCATGAAGGGG 5240 Query 77823 GTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATCAT 77881 | || || || |||| | || | ||| | | ||||| | ||| | |||||||| | Sbjct 5241 TTTCCAGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGA-GCTTCTGGGCTTTTATCGT 5299 Query 77882 AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 | || | ||| |||||| | || || |||||| ||||| || | Sbjct 5300 CTGGCGGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGCTTCAAACTCATCACCGTA 5359 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 ||||| | | |||| || || || |||||||||| || |||| || | | || Sbjct 5360 GACATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTCTC 5419 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||||||||| || |||||||| ||||| || || | || || || || | | | Sbjct 5420 AACTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAAC 5479 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||| || || || |||||| ||||| || ||||| | | ||| || ||||| || Sbjct 5480 TTCCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGG 5539 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 78181 ||| || || || || | | | || |||||||||||||| || ||||| | || | ||| Sbjct 5540 TTCGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGC 5599 Query 78182 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA 78241 |||||| || | || | ||||| || | || || || || || ||||| || || | Sbjct 5600 GGTGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGC 5659 Query 78242 AATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCA 78297 ||| ||| || | || || ||| ||| | || || ||||| || |||| Sbjct 5660 AATGTAAGAGCCCGTGGCACGGATA----CGATGTACATTCAGGCCAATTCCGCCAGCCA 5715 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 |||| || || | ||| || ||| | || || || || ||||| ||||| ||||| Sbjct 5716 TCTTGGAAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTT 5775 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 |||||| | | || ||| |||||| ||| | || ||||| ||||| || | || Sbjct 5776 TCATGTCGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTG 5835 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || || ||||| || || |||| || | || ||||| || || | || | Sbjct 5836 TAGGGGAAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCT 5895 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | | || | ||| |||||||| |||||||| | ||| ||||||||||| || | Sbjct 5896 CAACATCGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGA 5955 Query 78538 CCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 | |||| ||| || |||| | || ||| |||| ||| || || || || || | Sbjct 5956 CAATCTTTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATT 6015 Query 78598 TGTA 78601 ||| Sbjct 6016 GGTA 6019 >seq1008 Length=41606 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 ||||||||||| || || || ||||| ||||| | || ||||| || || | | | | Sbjct 2223 GGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGCATCGACGATAACTGCTTCT 2164 Query 48096 ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAA 48155 || ||| | || || | | | ||| || ||||| || ||| ||||| || Sbjct 2163 ACGACTTCTTTGCTGGGCCGGTTCTTCAAGTGGGAAAACAATAGACAGGCAAAGTCGGTG 2104 Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 || |||||||| || | || | |||||||| || || || |||||||| || ||| Sbjct 2103 TGGAGACCTTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGGCCGGGCATCAGACCA 2044 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || |||||||| || || | ||||||| || ||||| || ||||| ||||| Sbjct 2043 CGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTGAAGAAGATACCTTCAACGGCA 1984 Query 48276 GCAAATGC 48283 || || || Sbjct 1983 GCGAAAGC 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653525969760