Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1336 315 1e-80 seq1008 114 2e-20 >seq1336 Length=25880 Score = 315 bits (348), Expect = 1e-80 Identities = 1202/1858 (65%), Gaps = 42/1858 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | |||||| ||||| || | || | || ||| ||||| |||||||| Sbjct 4178 TTCTTGATCAACCGTGAATTGAATAGGTTGAGCGGCAGCTTGTGTTCGTAGGTAGTACAT 4237 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCC-GTAGAAATGCATGCTTGTTAGTTTGGAATAAC 75482 ||||| || ||||| || |||| || ||| || |||||||| || | ||| Sbjct 4238 GCCAGTCTTCAGACCAAGCTTCCACCCAGTA-AAGTGCATGCTCGTGATCTTGCCCATTG 4296 Query 75483 TCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAG 75542 | || || ||||||||||| | || || ||||| |||||||| || | ||| | Sbjct 4297 TGGGCTCCCTCATATGAATATTGAGTGATTGTGACTGATCAATGAAAGCACCACGATCGG 4356 Query 75543 CCGCCATTTTTA-TAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTG 75601 | ||||||| | || || || | ||| ||||||||| | ||| ||| | | |||| Sbjct 4357 CAGCCATTTGCACTACTGTTCGCT-GAGAAATTTCCCAGACAGTCTTGTATAAGGCTTTG 4415 Query 75602 ATATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTC 75658 | || | |||| | | || | |||| ||| || || || | || || ||| Sbjct 4416 ACTTCCGCCGGAATGCTAGGAATACTCTGAACGGAGCCACCCTCGGCGATGATGCGGTTC 4475 Query 75659 TTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACA 75718 || || | |||| ||| | | ||| | | | | || || ||||| || Sbjct 4476 TTCATATTATCAGACCATAGACCTAGATCGACCAGATCCTTCAGAAGCCATGGATTGACG 4535 Query 75719 ATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACA 75778 | ||| ||||| || | || || | |||| |||||| || || || || || | Sbjct 4536 ACTTGGAATTCACCGGCTAAAACACGACGAGAGTAAATGTTCGACGTGTAGGGCTCGAAG 4595 Query 75779 GATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAA 75838 |||| || || |||| ||| || | || || |||||||| || |||| | | | Sbjct 4596 CATTCGTTATTGCCCAGAATCTGCGAGGTACTGGCGGTCGGCATGGGAGCCATGAGGAGA 4655 Query 75839 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 75898 || || | | ||||||| | |||| | || || || ||| ||||||||||| Sbjct 4656 CTGTTGCGTACACCATGTTGTTTGATCTGCTCCTTGAGGGTAGCCCAGTCCCAAAGATCA 4715 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 || || |||| ||| | || || || ||||| || | | || || || | Sbjct 4716 GAGGGAGTGACATTCCACATGTCATACTGAAGAATGCCTTGAGAAACAGGAGAGCCCTCG 4775 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCGT 76016 || || |||||| || || | | ||| | || | | | || || || | | Sbjct 4776 TAAGTAGAGTAAGTACCTTCTTCCTTAGCAA--TCTCCATTGATGCAGTCAAAGCGGCAT 4833 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGAT 76076 || || || || ||||||| ||| || || | | | ||||| | |||||||| Sbjct 4834 GGTACATGGTCTCAAAAATCTGCTTGTTGAGCTGTCGAGCTTCGGGCGATTCAAAAGGCA 4893 Query 76077 AATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | | | || || | ||| ||||| ||||| || || | ||||||||| | || | Sbjct 4894 TGCGGAGAGCAAGGAAGGTATCGGCTAGACCCTGGACACCGAGACCAATAGGGCGGTGGC 4953 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 | | ||| | || || || | ||| || | || || || | | | || | Sbjct 4954 GCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTGCGTCGATGACTCTGTTCA 5013 Query 76197 GATTTCTGACAACTACTT---TAACCACGTCCTTTAGTTTGAGAAAATCAAAT-TTTCC- 76251 |||| | ||||| |||| | ||| ||| | || || |||||||| | ||||| Sbjct 5014 GATTGCGCACAACAACTTGGGTTACCTCGTGC---AGCTTTTGAAAATCATAGCTTTCCG 5070 Query 76252 ATCTAT----CACAAAC-ATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 | ||| ||| || | ||| ||| || ||||| | || ||||| || || ||| Sbjct 5071 AGTTATAGTCCACGAAGGACGGTAA-AGCCATGGATGCCAAGTTGCAAACAGCAACTTCA 5129 Query 76307 TT---AGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCA 76363 | |||| || || | || ||||| ||||| |||||| || || || || Sbjct 5130 TCTGGAGCACTG---TACTCAATGATCTCAGTGCAGAGATTAGAACTACGAATTGTACCC 5186 Query 76364 AGATTTTGTTGGTTGCTCTTTTTGTTA-CATGAGTCCTTATAAAGAACAAACGGAGTTCC 76422 || || | ||||||||||| || | || |||||| || || | || || |||| Sbjct 5187 AGGTTCTTCTGGTTGCTCTTGCGATTGGCGTG-GTCCTTGTAGAGCATGAAGGGGTTTCC 5245 Query 76423 AGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATT 76481 ||| || |||| | || | ||| | | ||||| | ||| | ||||||| | Sbjct 5246 AGTCTCTGTCTGAGCCTCTAGAATGGCATACCAGA-GCTTCTGGGCTTTTATCGTCTGGC 5304 Query 76482 TGTATCGCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAAC 76539 | || ||| |||||| || | ||| | | |||||| ||||| || | || Sbjct 5305 GGCCGCGACCCTCAGCTTCATACTTCTCGTAGAGGGC--TTCAAACTCATCACCGTAGAC 5362 Query 76540 ATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA-CTCACCATCTTCCTTAA 76598 ||| | | ||||| ||| || ||||| ||||||| || ||| || | ||||| | || Sbjct 5363 ATCGGCAAGACCAGCACACTCGTTCGGGCACATCAGTGTCCAGCTGCCGTTCTTC-TCAA 5421 Query 76599 CCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTT 76658 | |||||||| || |||||||| ||||| || || | || || || || | | | || Sbjct 5422 CTCGTTTCATGAACAGATCAGGAATCCAAAGGGCTAGGAAGAGGTCACGAGCACGAACTT 5481 Query 76659 CTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718 | || || || |||||| ||||| |||||||| | | ||| || ||||| |||| Sbjct 5482 CCTCTTTACCGTGGTTCTTTCGCAGATCCAGGAACTCAAATACATCCGAGTGCCACGGTT 5541 Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778 | || || || || | | | ||||||||||||||||| || ||||| | || | ||| | Sbjct 5542 CGAGGTAAATAGCAAAAGCGCCCGGTCGTTTATTACCACCTTGATCGACGTAGCGGGCGG 5601 Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838 |||| || | || | ||||| || | ||||| || || || ||||| || || | || Sbjct 5602 TGTTGTTGAAGACGCGTAACATGGGGACGATGCCATTCGACGTGCCATTGGTACCGGCAA 5661 Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 | ||| || ||||| ||| | | | ||||| ||||| || ||||| || | Sbjct 5662 TGTAAGAGCCCGTGGCACGGATACGATGTACATTCAGGCCAATTCCGCCAGCCATCTTGG 5721 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 | || | |||||| ||| | |||||||| |||||||| ||||||||||| |||||| Sbjct 5722 AAATCATAGCACATGTTTTAAGGGTGTCATAAATGCCCTCAATACTATCATCTTTCATGT 5781 Query 76959 TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAG 77018 | | || ||| |||||| ||| | || ||||| ||||| |||| |||||| | Sbjct 5782 CGACCAAGAAGCAGGAAGACATCTGAGGCTGCGGGGTTCCAGCATTGAACAGTGTAGGGG 5841 Query 77019 ATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT 77078 | ||||| ||||| |||| || | || ||||| || || | ||| || | || Sbjct 5842 AAGCATGGGTGAAGTATTTGAGGGACATGAGGTTGTAGGTCTCGAGGACTTTCTCAACAT 5901 Query 77079 CCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCT 77138 | | ||| ||||| || |||||||| | ||| |||||||||| || ||| ||| Sbjct 5902 CGTCTCCCCAAATACCTACCGCCACACGCATGATCATGTGCTGAGGTCTCTCGACAATCT 5961 Query 77139 TATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 | ||| || |||| | || ||| |||| ||| || || || || || | ||| Sbjct 5962 TTCCATTGATCTTCAGAAGATACGATCGCTCCAGAGTCTTGAAGCCGAAGTATTGGTA 6019 >seq1008 Length=41606 Score = 114 bits (126), Expect = 2e-20 Identities = 336/515 (65%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || || ||||| ||||| || || || ||||| || || || ||||| | Sbjct 2422 CATAACACCGGCCTTCTGGTAATCACCGACGCGCTTTTCGAAGAAGTTTGTCTTGCCACC 2363 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || || ||||| ||||| ||||| || ||| || | || | | || Sbjct 2362 GAGCGAAATGTTCTCCATGAAATCGAACGGGTTGGTAGAGCGGTAGACCTTCTCATTGCC 2303 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 || | || ||| | ||| || ||||| || || ||| ||||| | | ||| Sbjct 2302 CAAAGCGACAAGCAGACGATCGGCCACGAACTCAATGTACTGCTTCATGAGGTTTGCATT 2243 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || | || | ||||||||||| || || || ||||| || || | || || Sbjct 2242 CATACCGAGCAGACCGCAAGGTAGAGCCTCTGTCAGGAATTCTTGCTCGATCCTCACGGC 2183 Query 46566 ATC--CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAAC 46623 ||| ||||| | | | ||| ||| | || || | | | |||| || |||| Sbjct 2182 ATCGACGATA--ACTGCTTCTACGACTTCTTTGCTGGGCCGGTTCTTCAAGTGGGAAAAC 2125 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | || ||| ||||| || || || ||||| || | || | |||||||| || Sbjct 2124 AATAGACAGGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTAGAGAAG 2065 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 || || || ||||| || |||||||| |||||||| || |||| ||||||| || Sbjct 2064 GTCAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGCACCGCTG 2005 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT---CA 46800 ||||| || ||||| || || ||||| || | || | | | || | | || | Sbjct 2004 AAGAAGATACCTTCAACGGCAGCGAAAGCAATCAGACGTTGGGCAAAAGTCGAATTGCGA 1945 Query 46801 TTATGAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 | | ||||||| || ||||||| |||||||| || Sbjct 1944 TCAGCAATCCACTTTAGAGCCCAGTCAGCCTTCTT 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918724354880