Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1413 114 3e-20 seq1368 107 4e-18 seq1001 95.1 3e-14 >seq1413 Length=23416 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| ||| || ||||| || || || | Sbjct 19292 CAAG-TGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCGGCCGTCCTCCA 19350 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||||||||| | ||| || || | | ||| |||||||| ||||| | Sbjct 19351 GCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGA 19410 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | |||||||| || ||||| |||||||| || || | Sbjct 19411 TCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTCTTTC 19470 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| ||||| Sbjct 19471 CGGTGAGGGTCTTGACGAAGATTTGCAT 19498 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || ||||||||||| || ||||| ||||||||| | ||||| Sbjct 19052 GAGACGGAGCACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTTCG 19111 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || ||||||||||| | ||||||||| | | || ||||| Sbjct 19112 ACCATCTTCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTC 19171 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || || | || | | | ||||| || ||||| | || Sbjct 19172 CTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGT 19231 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | ||||| ||||||| |||||| Sbjct 19232 GATGGTCTTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 Score = 100 bits (110), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || || ||||| ||| || ||||||||||| || | || || | |||||||| Sbjct 19801 ACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 19860 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| || ||||| || | | |||||||| | | ||| || ||||| || | Sbjct 19861 AGTTGCTTT--CCAGCGAAAATCAATCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCT 19918 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 |||| || |||||| | || | |||| ||| ||| || || | || || || | Sbjct 19919 GAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCT 19978 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| ||||||||||| ||||||| |||||| Sbjct 19979 TGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009 >seq1368 Length=24850 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| || || || || || |||||||||||| Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | |||||| |||| | |||||| ||||| || || || || || ||| | || Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 8146 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || || || || || || ||||||||||| ||||| |||||| Sbjct 8145 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 8086 Query 152097 ACCTGCA 152103 | ||||| Sbjct 8085 ATCTGCA 8079 >seq1001 Length=42108 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | || || || || || |||||||| Sbjct 35575 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 35516 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | |||||||| | | ||| || ||||| || || || || |||||| | Sbjct 35515 GATCAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 35456 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| || || || || ||||| ||||||||||| ||||| || Sbjct 35455 GTCGATGGTGTCGCTCGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 35396 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 35395 GAAGATCTGCAT 35384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153794796124289