Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 179 8e-40
seq1001 163 6e-35
seq1368 134 3e-26
seq1008 120 6e-22
>seq1413
Length=23416
Score = 179 bits (198), Expect = 8e-40
Identities = 178/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
||||| ||||| || | |||||| || | ||||| || || |||||||||||||||| |
Sbjct 19783 CCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 19842
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||||||||| || ||||| || || || || ||||| ||||| ||||| ||
Sbjct 19843 AAG-GTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGG 19901
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || || | |||||||||||||||| || ||
Sbjct 19902 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAAGACTCCAC 19961
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| ||||| || || | |||||||||||| ||||||||
Sbjct 19962 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 20009
Score = 163 bits (180), Expect = 6e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||| ||||| |||| |||| ||| || || || |||||||||||
Sbjct 19271 ACCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCT 19330
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || || || ||||| | || ||||| || ||
Sbjct 19331 TAGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGG 19390
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||| ||||||||||||||| ||||| |||||| | ||||| ||||| |||| |||||
Sbjct 19391 GATACCTTCCTTGTCTTGGATC-TTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGA 19449
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| |||||||| || || | ||||| ||||| || |||||
Sbjct 19450 CTTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 19498
Score = 163 bits (180), Expect = 6e-35
Identities = 168/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| ||||| || || || || | ||||| || || |||||||||||||||
Sbjct 19500 CCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTG 19559
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || |||||||| ||||| || || ||||| ||
Sbjct 19560 AGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGG 19619
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||| ||||| || ||||| | || ||| | |||||||||||||||| ||| ||
Sbjct 19620 ATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAACC 19679
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092
|| || ||||||||||| || |||| ||||| |||| ||
Sbjct 19680 TCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGACGACTA 19719
>seq1001
Length=42108
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | ||||| || || |||||||||||||| |
Sbjct 35611 ACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 35552
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||| ||||||| |||||| ||||| ||
Sbjct 35551 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGG 35492
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| | || ||
Sbjct 35491 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCAC 35432
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 35431 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 35384
>seq1368
Length=24850
Score = 134 bits (148), Expect = 3e-26
Identities = 144/188 (77%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||| ||||| || || || ||||| |||||
Sbjct 8265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATA 8206
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
| ||| || || || || || ||||||||||| |||||| ||||| || || | ||
Sbjct 8205 AGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTC 8147
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| || | ||||| ||||| ||||| ||||| ||||| | ||||| |||||
Sbjct 8146 GATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 8087
Query 283091 TATCTGCA 283098
|||||||
Sbjct 8086 GATCTGCA 8079
>seq1008
Length=41606
Score = 120 bits (132), Expect = 6e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 230205 GACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAA 230264
|| ||| | |||||| |||| |||| |||||||| | |||||| ||| || || ||
Sbjct 2213 GAGGCTCTACCTTGCGGTCTGCTCGGTATGAATGCAAACCTCATGAAGCAGTACATTGAG 2272
Query 230265 TTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAAC 230324
||||| || |||||| | | || || | || | ||||| || || ||| | |||
Sbjct 2273 TTCGTGGCCGATCGTCTGCTTGTCGCTTTGGGCAATGAGAAGGTCTACCGCTCTACCAAC 2332
Query 230325 CCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGT 230384
|| |||| ||| |||||| |||||| ||| || || || |||||||||||||||||
Sbjct 2333 CCGTTCGATTTCATGGAGAACATTTCGCTCGGTGGCAAGACAAACTTCTTCGAAAAGCGC 2392
Query 230385 GTCAGCGATTATCAAAGGCCCGGTGT 230410
||| | ||||| || | | |||||||
Sbjct 2393 GTCGGTGATTACCAGAAGGCCGGTGT 2418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046715609442386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |