Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1001 156 3e-33 seq1413 150 1e-31 seq1368 134 1e-26 >seq1001 Length=42108 Score = 156 bits (172), Expect = 3e-33 Identities = 175/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| || ||||||||||| ||||||||||| |||| | Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| || |||||||| ||||| ||||||| ||| ||||| || | || Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | ||||||||| || |||| Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGCTCGACTCCA 35433 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 35432 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 35381 >seq1413 Length=23416 Score = 150 bits (166), Expect = 1e-31 Identities = 179/238 (75%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | ||| |||||||| || ||||||||||| ||||||||||| || Sbjct 19779 CATGCCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 19838 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | ||| | || ||||| ||||| || || || ||||| || ||||| |||| Sbjct 19839 AGACAAGGT-GCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTG 19897 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 ||| | || ||||| ||| ||||| ||| || ||| | || ||||| | || Sbjct 19898 GAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT--CGATAGTGTCCGAAGA 19955 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||||| || || ||||| || ||||| ||||| |||||||| ||||||||| Sbjct 19956 CTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATGATG 20013 Score = 140 bits (154), Expect = 2e-28 Identities = 161/213 (76%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| ||||| |||||| || |||||||| ||| ||||| | || |||| Sbjct 19289 CACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTTAGAGTTCG-GC-CGTCC 19346 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||||||||| || || ||||| | ||||| ||||| | ||| | ||||||||| || Sbjct 19347 TCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGGATACCTTCCTTGTCT 19406 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | |||||||| | ||||| || || | ||||||||| Sbjct 19407 TGGATCTTGCTCTTTACGTTGTCGATGGTGTCTGAAGATTCGACTTCTAGAGTAATCGTC 19466 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||| ||||||||||||||| Sbjct 19467 TTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499 Score = 129 bits (142), Expect = 4e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | || ||| ||||| || ||||||||||| ||||||||||| Sbjct 19493 TTGCATGCCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTA 19552 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || |||| || |||| || |||||||| |||||||| ||||| |||||||| || Sbjct 19553 GTCACTGAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTC 19612 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || || || ||| |||||| ||| | | | || ||||| | || Sbjct 19613 GGGGGGGATGCCCTCTTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGA 19672 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 ||| ||||| | || ||||||||||| || |||||||| |||| Sbjct 19673 TTCAACCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGACGA 19716 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||| ||||| || || |||||| ||||| ||||||||| ||||| || | || Sbjct 19061 CACTAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGCTCAGAGTT--CGACCATCT 19118 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 ||||||||||| || || ||||| | |||||||| |||| ||| | ||||||||| ||| Sbjct 19119 TCCAGCTGCTTACCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCC 19178 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||||| | | ||||| || | |||||||| |||| || || ||| Sbjct 19179 TGAATCTTGCTCTTCACGTTGTCAATGGTATCTGACGATTCCACTTCCAAGGTGATGGTC 19238 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | ||||| |||||||| ||||| Sbjct 19239 TTTCCTGTCAATGTCTTGACGAAGATCTGCAT 19270 >seq1368 Length=24850 Score = 134 bits (148), Expect = 1e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || |||| || |||||||| ||||| |||| Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | |||||||||||| | || | || ||||| ||| ||||| ||||| | Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 8148 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||||| ||| || ||||| | || || ||||| |||||||||||||| |||| Sbjct 8147 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 8088 Query 44328 AGATTTGCA 44336 |||| |||| Sbjct 8087 AGATCTGCA 8079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982682593303