Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1413 147 5e-30
seq1368 140 8e-28
seq1001 138 3e-27
>seq1413
Length=23416
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | |||||||| || |||||| | || |||||| |||||
Sbjct 19267 CAGATCTTCGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAATCGTCAGAT 19208
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || |||||||||||||| ||||| || ||||| ||||||||
Sbjct 19207 ACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 19148
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||||| |||||||| | ||||| |||||| || ||
Sbjct 19147 CGCCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGAACTCTGAGCGATTACAATATC 19088
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 19087 CAGAAGGAGTCTACTCTCCACCTAGT 19062
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| ||||| ||||| || || || || ||| ||||||
Sbjct 19495 CAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCAGAC 19436
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| || ||||| ||||| |||||||| || || ||
Sbjct 19435 ACCATCGACAACGTAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAACAG 19376
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||||||||||||| || || ||||| || || || | ||||| ||| || ||| |
Sbjct 19375 CGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAACATT 19316
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 19315 CAGAAGGAGTCTACGCTACA-CTTG 19292
Score = 136 bits (150), Expect = 1e-26
Identities = 145/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || |||||| | |||||||| || |||
Sbjct 20006 CAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCGGAC 19947
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || |||||||| |||||||||
Sbjct 19946 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAGCAA 19887
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||| | || ||||| ||||| || || |||||||| | || |||| | || || ||| |
Sbjct 19886 CGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCAC-CTTGTCTGACTACAACAT 19828
Query 178103 CCAAAAAGA 178111
||| || ||
Sbjct 19827 CCAGAAGGA 19819
Score = 125 bits (138), Expect = 2e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || ||||| |||||||| || ||||| ||| || ||||| ||||
Sbjct 19716 TCGTCAAGACCCTGACTGGAAAGACGATCACACTTGAGGTTGAATCTTCGGACACTATCG 19657
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||||||||||||||| || ||||| || |||||||| || | |
Sbjct 19656 ACAACGTCAAGTCGAAGATTCAGGACAAAGAGGGCATCCCCCCCGACCAGCAGCGCTTGA 19597
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| || |||||||| |||||||| || || | || || || || ||| |||| || |
Sbjct 19596 TTTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACACTCAGTGACTACAACATCCAGAAGG 19537
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || |||||
Sbjct 19536 AGAGCACCCTCCACCTTGT 19518
>seq1368
Length=24850
Score = 140 bits (154), Expect = 8e-28
Identities = 142/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || ||| |||
Sbjct 8081 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 8140
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || |||||||| ||||| |||||
Sbjct 8141 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAGCAG 8200
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||||||||| || ||||| || || || | || || |||| || ||| ||
Sbjct 8201 CGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATC 8260
Query 178104 CAAAA 178108
|| ||
Sbjct 8261 CAGAA 8265
>seq1001
Length=42108
Score = 138 bits (152), Expect = 3e-27
Identities = 146/191 (76%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || ||||| || || ||||| || || || ||||||||||||||||| |||
Sbjct 35387 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC--- 35443
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||| || ||||| ||||| |||||||| || || ||||| || ||||||
Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
||||| || ||||||||||| || |||||||| || || | || || |||| || |||
Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563
Query 178101 GTCCAAAAAGA 178111
|||| || ||
Sbjct 35564 ATCCAGAAGGA 35574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203704071284246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |