Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10] 1,759 sequences; 43,620,960 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1413 147 5e-30 seq1368 140 8e-28 seq1001 138 3e-27 >seq1413 Length=23416 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | |||||||| || |||||| | || |||||| ||||| Sbjct 19267 CAGATCTTCGTCAAGACATTGACAGGAAAGACCATCACCTTGGAAGTGGAATCGTCAGAT 19208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||||||||| ||||| || ||||| |||||||| Sbjct 19207 ACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 19148 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | ||||| |||||| || || Sbjct 19147 CGCCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGAACTCTGAGCGATTACAATATC 19088 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 19087 CAGAAGGAGTCTACTCTCCACCTAGT 19062 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| ||||| || || || || ||| |||||| Sbjct 19495 CAAATCTTCGTCAAGACCCTCACCGGAAAGACGATTACTCTAGAAGTCGAATCTTCAGAC 19436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || ||||| ||||| |||||||| || || || Sbjct 19435 ACCATCGACAACGTAAAGAGCAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAACAG 19376 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || ||||| || || || | ||||| ||| || ||| | Sbjct 19375 CGACTTATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGAACTCTAAGCGACTACAACATT 19316 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 19315 CAGAAGGAGTCTACGCTACA-CTTG 19292 Score = 136 bits (150), Expect = 1e-26 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || |||||| | |||||||| || ||| Sbjct 20006 CAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCTTCGGAC 19947 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| ||||||||| Sbjct 19946 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAGCAA 19887 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | || ||||| ||||| || || |||||||| | || |||| | || || ||| | Sbjct 19886 CGATTGATTTTCGCTGGAAAGCAACTGGAAGATGGCCGCAC-CTTGTCTGACTACAACAT 19828 Query 178103 CCAAAAAGA 178111 ||| || || Sbjct 19827 CCAGAAGGA 19819 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| |||||||| || ||||| ||| || ||||| |||| Sbjct 19716 TCGTCAAGACCCTGACTGGAAAGACGATCACACTTGAGGTTGAATCTTCGGACACTATCG 19657 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||||||||||||||| || ||||| || |||||||| || | | Sbjct 19656 ACAACGTCAAGTCGAAGATTCAGGACAAAGAGGGCATCCCCCCCGACCAGCAGCGCTTGA 19597 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | || |||||||| |||||||| || || | || || || || ||| |||| || | Sbjct 19596 TTTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACACTCAGTGACTACAACATCCAGAAGG 19537 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || ||||| Sbjct 19536 AGAGCACCCTCCACCTTGT 19518 >seq1368 Length=24850 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 8081 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 8140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || |||||||| ||||| ||||| Sbjct 8141 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAGCAG 8200 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || || || | || || |||| || ||| || Sbjct 8201 CGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATC 8260 Query 178104 CAAAA 178108 || || Sbjct 8261 CAGAA 8265 >seq1001 Length=42108 Score = 138 bits (152), Expect = 3e-27 Identities = 146/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || ||||| || || ||||| || || || ||||||||||||||||| ||| Sbjct 35387 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGAGC--- 35443 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| || |||||| Sbjct 35444 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 35503 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || ||||||||||| || |||||||| || || | || || |||| || ||| Sbjct 35504 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 35563 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 35564 ATCCAGAAGGA 35574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704071284246