Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Kretzschmaria_20deusta_20[genbank_20GCA_5F002081935.2_202017-08-10]
1,759 sequences; 43,620,960 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1001 185 8e-42
seq1413 136 4e-27
seq1368 129 5e-25
seq518 100 3e-16
>seq1001
Length=42108
Score = 185 bits (204), Expect = 8e-42
Identities = 180/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| || || || |||||||||||||| ||||| |||||||||
Sbjct 35610 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 35551
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| |||||||||||||||||||| ||||| || || ||||| | |||
Sbjct 35550 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGG 35491
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||||||||||||||
Sbjct 35490 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTCGACTCCA 35433
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 35432 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 35383
>seq1413
Length=23416
Score = 136 bits (150), Expect = 4e-27
Identities = 172/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| || ||||| || || |||||||||||||| ||||| ||||| ||
Sbjct 19782 GCCACCTCGCAGACGCAATACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 19841
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || || ||||| || ||||| |||| || || ||||| | ||
Sbjct 19842 CAAGGTGCGGCCATCTTCCAGTTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCTGGAGG 19901
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTC 41811
| || |||||||||| ||| | || | ||| || | || | |||||| |||||
Sbjct 19902 GATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCCGAAGACTC 19958
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||||| || || || || || || || ||||| ||||| |||||||||
Sbjct 19959 CACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATG 20010
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || || || | ||| || || || |||||||||||||| ||||| |||||
Sbjct 19499 GCCGCCACGAAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCACT 19558
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| || || |||| ||||||||||| ||||| || |||| |||||| ||||| | |||
Sbjct 19559 GAGTGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGG 19618
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||| |||||| ||| | || | | ||| | | | |||||| || || |
Sbjct 19619 GATGCCCTCTTTGTCC-TGAATCTTCGACTTGACGTTGTCGATAGTGTCCGAAGATTCAA 19677
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|||| | || ||||| || || ||||| ||||| ||||
Sbjct 19678 CCTCAAGTGTGATCGTCTTTCCAGTCAGGGTCTTGACGA 19716
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || | ||| | ||||| || ||||| ||||||||||||||| ||||||
Sbjct 19272 CCACCACGCAAACGAAGCACCAAGTGTAGCGTAGACTCCTTCTGAATGTTGTAGTCGCTT 19331
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || |||||||| || ||||| || || |||||||| || | ||
Sbjct 19332 AGAGTTCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGTCGCTGTTGATCGGGAGGG 19391
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| ||| || ||| ||| | | | ||||| || || ||
Sbjct 19392 ATACCTTCCTTGTCTTGGATCTTGCTCTT-TACGTTGTCGATGGTGTCTGAAGATTCGAC 19450
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| | || ||||| || || || || ||||| ||||| || ||||||
Sbjct 19451 TTCTAGAGTAATCGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATG 19499
>seq1368
Length=24850
Score = 129 bits (142), Expect = 5e-25
Identities = 144/190 (76%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||||||||| || |||| || ||||||||||||||||| |
Sbjct 8267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 8208
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
| || ||||| || |||| ||| | | |||||||||| ||| || |||| || |
Sbjct 8207 TAAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTG 8149
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | |||||| ||||| ||||| | || || || || ||||| || ||||| |||
Sbjct 8148 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 8089
Query 41852 AAAATCTGCA 41861
|| |||||||
Sbjct 8088 AAGATCTGCA 8079
>seq518
Length=5935
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || |||||||||||| ||||||| ||| | |||||| || |||
Sbjct 349 CGCATCGCGCCCCGCTCCGGCCTCGCCTCCAAGCACTCGATCCAGACGGGCGCGGGCGTC 408
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | || | ||| | |||||||||||||||||
Sbjct 409 ATCGACGCCGACTACCGCGGGCAGGTGAAGATCCTGCTCTTCAACCACGGCGA 461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462293835090800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |