Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4 105 8e-18
>seq4
Length=4775223
Score = 105 bits (116), Expect = 8e-18
Identities = 271/411 (66%), Gaps = 4/411 (1%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| || ||||| | || ||||| | | ||| |||| | || || || |||||
Sbjct 4664074 CCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATG 4664015
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| || || |||||||| ||||| || || || | | | |||||| |||||
Sbjct 4664014 AACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCG 4663955
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| ||| |||||||| | | ||| | |||||||| || | ||| |||
Sbjct 4663954 TGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATG 4663895
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 4663894 GCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAG 4663835
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||||||| | || ||||| |||| || ||||| ||
Sbjct 4663834 ACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCG 4663775
Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
||||||| || | |||| |||| || || || || | |||||||| | |
Sbjct 4663774 GTGGCACGGATGCGGTGGACGTTGA--GACCGATGCCTCCAGCGGTCTTAGAGATCATGG 4663717
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389
|||| || | ||| || ||||||||||| || || || ||| ||||||
Sbjct 4663716 CGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGT 4663666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721384775920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |