Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 >seq4 Length=4775223 Score = 105 bits (116), Expect = 8e-18 Identities = 271/411 (66%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||| | || ||||| | | ||| |||| | || || || ||||| Sbjct 4664074 CCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGACACGCTTCATG 4664015 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || |||||||| ||||| || || || | | | |||||| ||||| Sbjct 4664014 AACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGGACTTCCTCCTTTCCG 4663955 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||| |||||||| | | ||| | |||||||| || | ||| ||| Sbjct 4663954 TGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCCACGGCTCAAGGTAGATG 4663895 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 4663894 GCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAG 4663835 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||||||| | || ||||| |||| || ||||| || Sbjct 4663834 ACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTACCGGCAATGTAGCTGCCG 4663775 Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||| || | |||| |||| || || || || | |||||||| | | Sbjct 4663774 GTGGCACGGATGCGGTGGACGTTGA--GACCGATGCCTCCAGCGGTCTTAGAGATCATGG 4663717 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 |||| || | ||| || ||||||||||| || || || ||| |||||| Sbjct 4663716 CGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGT 4663666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721384775920