Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 336 2e-87
seq3 158 1e-33
seq5 132 5e-26
seq2 116 4e-21
>seq6
Length=2952248
Score = 336 bits (372), Expect = 2e-87
Identities = 585/854 (69%), Gaps = 64/854 (7%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | |||||
Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| ||||||| | ||| | |||||| | |||||| |||||| |
Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCG 1057816
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || |||||||| || |||||||| |||||||| |||||||||||
Sbjct 1057815 CACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCGC 1057756
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| |||| | |||| ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 1057755 TTCAGCTCCG-AGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 1057697
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCG 116929
||||||| | ||||| || | || ||| ||| |||||||||||| | ||| |
Sbjct 1057696 GGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGCCCAA 1057637
Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGA-----------------------GACGA 116966
| | | | || | |||| ||||| ||||| || ||
Sbjct 1057636 GCAGCGCAACTAC--CTGTTCAACGCTATCGACAACAGTACGTTGTACCACATATGATGA 1057579
Query 116967 TGCCG---------------TGCGTCAAAG------------AGAAG---GCCGAGTGGG 116996
||| | |||||| || ||||| ||||| ||||
Sbjct 1057578 TGCAGAGCTTGGATCACTAACGCGTCACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGG 1057519
Query 116997 CGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGG 117056
| || ||||||||| || || | | |||||| ||| ||| | |||||||| |
Sbjct 1057518 CTCTCCGCTGGATCTGCGACAAGAACTCTACCTTCGCTTCGCGTCTGATTGCCTTCGCCG 1057459
Query 117057 CCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCG 117116
|||||||||| ||||||| ||| |||||| |||| || ||||||||||| || |
Sbjct 1057458 CCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTG 1057399
Query 117117 GCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATT 117176
| |||||||||||||| || ||| ||||||||||||||| | |||||||| ||||
Sbjct 1057398 GTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAGGGAATGCACA 1057339
Query 117177 GCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCA 117236
|||||||||||| |||||||| ||| | | | || ||| | | | ||||
Sbjct 1057338 CCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCCAGCCCTGAGGCCGTCG 1057279
Query 117237 GGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGG 117296
| |||| | ||||| || || | |||||| || |||||||| || |||||||| |
Sbjct 1057278 AGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCG 1057219
Query 117297 TGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGAC 117355
| |||||||| | || || || | |||| || |||||||||||||||||||||
Sbjct 1057218 TCGCCCTGCTGGGCATGAA-CGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 1057160
Query 117356 AGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTT 117415
| |||||| | | || | | | ||| |||||||| || ||||||| | |||||
Sbjct 1057159 CGCCTGCTGGTGGCTCTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTC 1057100
Query 117416 ATGAACCTCATCTC 117429
||| | ||||||
Sbjct 1057099 ATGGAGAACATCTC 1057086
>seq3
Length=5700105
Score = 158 bits (174), Expect = 1e-33
Identities = 166/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| ||||| ||||||||| | || || || | |
Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || |||| ||||| ||||| |||||| |||||||
Sbjct 1598131 GATACCATCGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCA 1598073
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| |||||| || |||||||| |||| ||||| ||| ||||||||
Sbjct 1598072 GCAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAA 1598013
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| |||| || || || ||| ||||
Sbjct 1598012 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 1597977
Score = 136 bits (150), Expect = 4e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| |||||||| |||| || ||| | ||
Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| ||||| |||||| |||||||
Sbjct 1597903 GACACCATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 1597845
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| || || |||||||| || | ||||| ||| ||||||||
Sbjct 1597844 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAA 1597785
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||| ||||||||| | || |||||
Sbjct 1597784 CATTCAGAAGGAGTCGACCCTGCA 1597761
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| | || ||||| || | |||| | | | | |||||
Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| |||||||| || |||| ||||| || || |||| ||| |||||
Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| || ||||| |||||||||||||||||||||| ||| || ||
Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 1598216
Query 40894 CTAGT 40898
|| ||
Sbjct 1598215 CTCGT 1598211
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| | || ||||| | |||||| | | | |||| | |||
Sbjct 1598681 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG-TGAAG 1598623
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || || ||||| || |||| ||||| || || |||| ||| |||
Sbjct 1598622 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGC 1598563
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | || ||| | || |||||||||||||||||| | || ||
Sbjct 1598562 AAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 1598503
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || | ||| || | || ||
Sbjct 1598502 CACCTCGTCCTCCGCCTGCGCGGTGG 1598477
>seq5
Length=4159236
Score = 132 bits (146), Expect = 5e-26
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| | || ||||| || | |||| | |
Sbjct 355235 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 355176
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 355175 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 355116
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 355115 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 355056
Query 40879 G 40879
|
Sbjct 355055 G 355055
>seq2
Length=6116231
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| |||||||||| || || |||| ||| ||||| ||||| ||
Sbjct 4767813 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 4767872
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | || |||||| ||||||||||||||||||||| |||| || || || ||| |
Sbjct 4767873 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 4767932
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 4767933 CGCCTGCGTGGTGG 4767946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219013233040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |