Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 336 2e-87 seq3 158 1e-33 seq5 132 5e-26 seq2 116 4e-21 >seq6 Length=2952248 Score = 336 bits (372), Expect = 2e-87 Identities = 585/854 (69%), Gaps = 64/854 (7%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | ||||| Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | ||| | |||||| | |||||| |||||| | Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCG 1057816 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| || |||||||| |||||||| ||||||||||| Sbjct 1057815 CACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCGC 1057756 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| | |||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1057755 TTCAGCTCCG-AGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 1057697 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCG 116929 ||||||| | ||||| || | || ||| ||| |||||||||||| | ||| | Sbjct 1057696 GGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGCCCAA 1057637 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGA-----------------------GACGA 116966 | | | | || | |||| ||||| ||||| || || Sbjct 1057636 GCAGCGCAACTAC--CTGTTCAACGCTATCGACAACAGTACGTTGTACCACATATGATGA 1057579 Query 116967 TGCCG---------------TGCGTCAAAG------------AGAAG---GCCGAGTGGG 116996 ||| | |||||| || ||||| ||||| |||| Sbjct 1057578 TGCAGAGCTTGGATCACTAACGCGTCACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGG 1057519 Query 116997 CGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGG 117056 | || ||||||||| || || | | |||||| ||| ||| | |||||||| | Sbjct 1057518 CTCTCCGCTGGATCTGCGACAAGAACTCTACCTTCGCTTCGCGTCTGATTGCCTTCGCCG 1057459 Query 117057 CCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCG 117116 |||||||||| ||||||| ||| |||||| |||| || ||||||||||| || | Sbjct 1057458 CCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTG 1057399 Query 117117 GCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATT 117176 | |||||||||||||| || ||| ||||||||||||||| | |||||||| |||| Sbjct 1057398 GTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAGGGAATGCACA 1057339 Query 117177 GCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCA 117236 |||||||||||| |||||||| ||| | | | || ||| | | | |||| Sbjct 1057338 CCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCCAGCCCTGAGGCCGTCG 1057279 Query 117237 GGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGG 117296 | |||| | ||||| || || | |||||| || |||||||| || |||||||| | Sbjct 1057278 AGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCG 1057219 Query 117297 TGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGAC 117355 | |||||||| | || || || | |||| || ||||||||||||||||||||| Sbjct 1057218 TCGCCCTGCTGGGCATGAA-CGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGAC 1057160 Query 117356 AGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTT 117415 | |||||| | | || | | | ||| |||||||| || ||||||| | ||||| Sbjct 1057159 CGCCTGCTGGTGGCTCTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTC 1057100 Query 117416 ATGAACCTCATCTC 117429 ||| | |||||| Sbjct 1057099 ATGGAGAACATCTC 1057086 >seq3 Length=5700105 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| ||||||||| | || || || | | Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| |||||| ||||||| Sbjct 1598131 GATACCATCGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCA 1598073 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||| || |||||||| |||| ||||| ||| |||||||| Sbjct 1598072 GCAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAA 1598013 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| |||| || || || ||| |||| Sbjct 1598012 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 1597977 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| |||| || ||| | || Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| ||||| |||||| ||||||| Sbjct 1597903 GACACCATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 1597845 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| || || |||||||| || | ||||| ||| |||||||| Sbjct 1597844 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAA 1597785 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| | || ||||| Sbjct 1597784 CATTCAGAAGGAGTCGACCCTGCA 1597761 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || ||||| || | |||| | | | | ||||| Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||| || |||| ||||| || || |||| ||| ||||| Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| || ||||| |||||||||||||||||||||| ||| || || Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 1598216 Query 40894 CTAGT 40898 || || Sbjct 1598215 CTCGT 1598211 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || ||||| | |||||| | | | |||| | ||| Sbjct 1598681 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG-TGAAG 1598623 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || || ||||| || |||| ||||| || || |||| ||| ||| Sbjct 1598622 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGC 1598563 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || ||| | || |||||||||||||||||| | || || Sbjct 1598562 AAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 1598503 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| || | || || Sbjct 1598502 CACCTCGTCCTCCGCCTGCGCGGTGG 1598477 >seq5 Length=4159236 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || ||||| || | |||| | | Sbjct 355235 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATC 355176 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 355175 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 355116 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 355115 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 355056 Query 40879 G 40879 | Sbjct 355055 G 355055 >seq2 Length=6116231 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 4767813 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 4767872 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || |||||| ||||||||||||||||||||| |||| || || || ||| | Sbjct 4767873 GATGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 4767932 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 4767933 CGCCTGCGTGGTGG 4767946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040