Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 1e-25
seq5 104 2e-17
seq2 84.2 1e-11
>seq3
Length=5700105
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | |||||||||||| | ||| || ||||| ||||||||||| ||
Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| |||||| || ||||| || || ||||||||||| |||
Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||| | ||| || ||
Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||||||||| || || || |||||||||||
Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| | || || ||||| ||||||||||| ||
Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||| || ||||||||||| ||||||||||| |||
Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | |||| ||||| ||
Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACC 1597916
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||| ||||| ||||| || || || || ||||||||
Sbjct 1597917 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 114 bits (126), Expect = 8e-21
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || || ||||| ||||||||||||||||| |||| ||||
Sbjct 1598208 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCC 1598267
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || || |||||||| || || | || |||||||||
Sbjct 1598268 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 1598327
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | || | || ||||| |||| ||||||||
Sbjct 1598328 TGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTC 1598387
Query 34358 TTGCCGGT 34365
||||||||
Sbjct 1598388 TTGCCGGT 1598395
>seq5
Length=4159236
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| ||
Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|| | || | || ||||| || | |||||||| ||||| ||||| || || || |||
Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 355236
>seq2
Length=6116231
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||| ||||| | || || ||||| ||||||||||| ||
Sbjct 4767946 CCACCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 4767887
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| | || || | ||||||||| ||||| || || ||||||||||| |||
Sbjct 4767886 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 4767827
Query 34283 ACGCTCTCCTTGTC 34296
| || |||||||||
Sbjct 4767826 ATGCCCTCCTTGTC 4767813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071885814240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |