Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 253 2e-62 seq6 145 7e-30 seq3 109 5e-19 >seq4 Length=4775223 Score = 253 bits (280), Expect = 2e-62 Identities = 502/735 (68%), Gaps = 11/735 (1%) Strand=Plus/Minus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| ||||| ||||| || || || || |||||||| || || ||| || | Sbjct 4664342 AGCCAAG-TTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAA 4664284 Query 23088 GATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | || ||| | || ||||| | ||| |||||||||| || || ||||| | Sbjct 4664283 GGTTAGAGCTGCGA---ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGT 4664227 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||| | |||| | || |||| |||||||| || | ||||| || || ||||| Sbjct 4664226 CCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACA 4664167 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 |||| || | ||| ||| | || | | ||| || | |||||||| | ||| | Sbjct 4664166 GCTTCTGCGCCCGGACA-GTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGA 4664108 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || || || || | || || ||| ||||| || || ||| | || |||||||| Sbjct 4664107 GCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGG 4664048 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | || | || || || |||| || || || || ||||| ||||||||| Sbjct 4664047 GTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAG 4663988 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 ||||| || || ||||| || ||||| || ||| |||||| | || | || Sbjct 4663987 AACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTG 4663928 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 ||||| || || ||||||||||| ||||| | |||||| |||||||| | ||| || ||| Sbjct 4663927 AACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCG 4663868 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| || ||||| || || ||||||||||| || | ||||| || | ||||| ||| Sbjct 4663867 CCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTG 4663808 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCG-AACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 | |||| | ||| || | | || | || || | | ||| |||| || Sbjct 4663807 CTGGTGCCG-TTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAG 4663749 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 ||| |||||||| | | || || ||||| ||||| || || |||||||||||||| Sbjct 4663748 ACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 4663689 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 ||||||||||||||| || | ||| | ||| || || | || |||| ||||| || Sbjct 4663688 CTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGT 4663629 Query 23743 AGCGGCCGAGAACAG 23757 |||| |||||| Sbjct 4663628 TCCGGCGTTGAACAG 4663614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| || ||||| || |||| ||| ||||||||||| ||||| || || | ||| Sbjct 4663530 GACATGAGGTTGTAAGTCTCGACGGCCTTCTCAATGTCCTCGCCGTGAATGCCAACAGCG 4663471 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || ||||| ||||| | ||| || ||||| || || | || || ||| ||| Sbjct 4663470 ACACGCATGATCATTTGTTGTGGCCTCTCAGCCACCTTCCCATCGATGCGGAGCAGGTAT 4663411 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 || | | | ||| ||||| || || || | || | ||||| ||||||| || ||| Sbjct 4663410 GACCTCTCAAGCGTCTTAAAGCCGAAGTATTGGTATTGGAAGTCGCGATCGTAAACGATG 4663351 Query 23969 GCCGAATTCA 23978 ||||| |||| Sbjct 4663350 GCCGAGTTCA 4663341 >seq6 Length=2952248 Score = 145 bits (160), Expect = 7e-30 Identities = 292/426 (69%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || |||||||||||||| ||||| ||||| ||| || || | || || Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || || ||||||||||| || || |||||| | || || || Sbjct 1057414 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGT 1057355 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152 |||||||| | || || || ||||| ||||| ||| ||| ||||| ||| || | Sbjct 1057354 GACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTC--GAAGC 1057297 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | | || | || | | ||||| |||||||| || | ||||| || ||||| Sbjct 1057296 CCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCC 1057237 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 |||| || || || || || ||| |||| || |||||| | | |||| |||||| Sbjct 1057236 TCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACA 1057177 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAA 58327 | ||||| || |||||| | || || | | || |||| ||| || | ||||| Sbjct 1057176 TCGAGTTCGTCGCCGACCGCCTGCTGGTGG--CT-CTTGGCAACAAGA-AGT-ACTACAA 1057122 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 | ||| || || || || || ||| | ||||||||| | |||||||| ||||| || Sbjct 1057121 CGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTT 1057062 Query 58388 CGAAAA 58393 ||| || Sbjct 1057061 CGAGAA 1057056 >seq3 Length=5700105 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || ||||| |||| || ||| | ||| Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || ||| || | | ||||||||| || | || || ||| Sbjct 1597903 GACACCATCGACAACGTGAA---GAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 1597847 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| || ||| |||| || | ||| | || || Sbjct 1597846 CAGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTAC 1597787 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || ||||| || || |||| ||| | ||| | || || Sbjct 1597786 AACATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 1597737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || ||||| |||| Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| |||| ||| | ||| | || || ||| Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || ||||| || Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 1597980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || ||||||||| |||| | || || | Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAA---G 1598623 Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | ||| ||||||||| | || || || ||||||||||| || ||||||||| Sbjct 1598622 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGC 1598563 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || || || || ||||| ||||| || || || ||||| ||| Sbjct 1598562 AAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 1598503 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || | ||| | || |||| Sbjct 1598502 CACCTCGTCCTCCGCCTGCGCGGTGGTA 1598475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766238409680