Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4 253 2e-62
seq6 145 7e-30
seq3 109 5e-19
>seq4
Length=4775223
Score = 253 bits (280), Expect = 2e-62
Identities = 502/735 (68%), Gaps = 11/735 (1%)
Strand=Plus/Minus
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|| |||| ||||| ||||| || || || || |||||||| || || ||| || |
Sbjct 4664342 AGCCAAG-TTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAA 4664284
Query 23088 GATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144
| || ||| | || ||||| | ||| |||||||||| || || ||||| |
Sbjct 4664283 GGTTAGAGCTGCGA---ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGT 4664227
Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||||||| | |||| | || |||| |||||||| || | ||||| || || |||||
Sbjct 4664226 CCTTGTACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACA 4664167
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
|||| || | ||| ||| | || | | ||| || | |||||||| | ||| |
Sbjct 4664166 GCTTCTGCGCCCGGACA-GTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGA 4664108
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
|| || || || | || || ||| ||||| || || ||| | || ||||||||
Sbjct 4664107 GCCTCGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGG 4664048
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| | || | || || || |||| || || || || ||||| |||||||||
Sbjct 4664047 GTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAG 4663988
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
||||| || || ||||| || ||||| || ||| |||||| | || | ||
Sbjct 4663987 AACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTG 4663928
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
||||| || || ||||||||||| ||||| | |||||| |||||||| | ||| || |||
Sbjct 4663927 AACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCG 4663868
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| || ||||| || || ||||||||||| || | ||||| || | ||||| |||
Sbjct 4663867 CCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTG 4663808
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCG-AACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
| |||| | ||| || | | || | || || | | ||| |||| ||
Sbjct 4663807 CTGGTGCCG-TTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAG 4663749
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
||| |||||||| | | || || ||||| ||||| || || ||||||||||||||
Sbjct 4663748 ACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 4663689
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
||||||||||||||| || | ||| | ||| || || | || |||| ||||| ||
Sbjct 4663688 CTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGT 4663629
Query 23743 AGCGGCCGAGAACAG 23757
|||| ||||||
Sbjct 4663628 TCCGGCGTTGAACAG 4663614
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848
||||| || ||||| || |||| ||| ||||||||||| ||||| || || | |||
Sbjct 4663530 GACATGAGGTTGTAAGTCTCGACGGCCTTCTCAATGTCCTCGCCGTGAATGCCAACAGCG 4663471
Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908
|| ||||| ||||| | ||| || ||||| || || | || || ||| |||
Sbjct 4663470 ACACGCATGATCATTTGTTGTGGCCTCTCAGCCACCTTCCCATCGATGCGGAGCAGGTAT 4663411
Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968
|| | | | ||| ||||| || || || | || | ||||| ||||||| || |||
Sbjct 4663410 GACCTCTCAAGCGTCTTAAAGCCGAAGTATTGGTATTGGAAGTCGCGATCGTAAACGATG 4663351
Query 23969 GCCGAATTCA 23978
||||| ||||
Sbjct 4663350 GCCGAGTTCA 4663341
>seq6
Length=2952248
Score = 145 bits (160), Expect = 7e-30
Identities = 292/426 (69%), Gaps = 14/426 (3%)
Strand=Plus/Minus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| || || |||||||||||||| ||||| ||||| ||| || || | || ||
Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||| || || || ||||||||||| || || |||||| | || || ||
Sbjct 1057414 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGT 1057355
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152
|||||||| | || || || ||||| ||||| ||| ||| ||||| ||| || |
Sbjct 1057354 GACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTC--GAAGC 1057297
Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212
| | | || | || | | ||||| |||||||| || | ||||| || |||||
Sbjct 1057296 CCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCC 1057237
Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272
|||| || || || || || ||| |||| || |||||| | | |||| ||||||
Sbjct 1057236 TCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACA 1057177
Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAA 58327
| ||||| || |||||| | || || | | || |||| ||| || | |||||
Sbjct 1057176 TCGAGTTCGTCGCCGACCGCCTGCTGGTGG--CT-CTTGGCAACAAGA-AGT-ACTACAA 1057122
Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387
| ||| || || || || || ||| | ||||||||| | |||||||| ||||| ||
Sbjct 1057121 CGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTT 1057062
Query 58388 CGAAAA 58393
||| ||
Sbjct 1057061 CGAGAA 1057056
>seq3
Length=5700105
Score = 109 bits (120), Expect = 5e-19
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || ||||| || ||||| |||| || ||| | |||
Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| |||| | || || ||| || | | ||||||||| || | || || |||
Sbjct 1597903 GACACCATCGACAACGTGAA---GAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 1597847
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||||| || |||||||| || ||| |||| || | ||| | || ||
Sbjct 1597846 CAGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTAC 1597787
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||||| || || ||||| || || |||| ||| | ||| | || ||
Sbjct 1597786 AACATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 1597737
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || |||||| | || ||||| ||||
Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| | || ||||||||| || | || || ||||||
Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| || || ||| |||| ||| | ||| | || || |||
Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || ||||| || ||||| ||
Sbjct 1598011 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 1597980
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/208 (70%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| | || || || ||||||||| |||| | || || |
Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAA---G 1598623
Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | ||| ||||||||| | || || || ||||||||||| || |||||||||
Sbjct 1598622 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGC 1598563
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || || || || ||||| ||||| || || || ||||| |||
Sbjct 1598562 AAGCAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTT 1598503
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || | ||| | || ||||
Sbjct 1598502 CACCTCGTCCTCCGCCTGCGCGGTGGTA 1598475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766238409680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |