Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq3 86.0 6e-12
>seq6
Length=2952248
Score = 118 bits (130), Expect = 1e-21
Identities = 161/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
||||| || || || || || ||||| | ||||| || | ||||| | || |||||
Sbjct 1057264 GAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGC 1057205
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956
|||||||| | | | |||||| ||||||||||||| || || ||| | ||| || ||
Sbjct 1057204 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCT 1057145
Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016
|| || | ||| ||||| || ||| |||||||| || ||| | ||||| |||
Sbjct 1057144 CTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCG 1057085
Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
||| | ||||| || ||||| ||||||| || || || || |||
Sbjct 1057084 CTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTAC 1057040
>seq3
Length=5700105
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| || ||||| || || ||||| ||||| || || | || ||||||||
Sbjct 1598500 GTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCCTCGAGCTG 1598559
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| ||||| |||| ||||| |||||||| ||||| |||||||| || || ||| ||
Sbjct 1598560 CTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTT 1598619
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | ||||||| | ||| ||||||| ||| | |||||||||||
Sbjct 1598620 GCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1598679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063820176800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |