Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq3 86.0 6e-12 >seq6 Length=2952248 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| || || || || || ||||| | ||||| || | ||||| | || ||||| Sbjct 1057264 GAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGC 1057205 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| | | | |||||| ||||||||||||| || || ||| | ||| || || Sbjct 1057204 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCT 1057145 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 || || | ||| ||||| || ||| |||||||| || ||| | ||||| ||| Sbjct 1057144 CTTGGCAACAAGAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCG 1057085 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||| | ||||| || ||||| ||||||| || || || || ||| Sbjct 1057084 CTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTAC 1057040 >seq3 Length=5700105 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| ||||| || || | || |||||||| Sbjct 1598500 GTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGGCCATCCTCGAGCTG 1598559 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| |||||||| ||||| |||||||| || || ||| || Sbjct 1598560 CTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTT 1598619 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||| ||||||| ||| | ||||||||||| Sbjct 1598620 GCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1598679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063820176800