Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 >seq4 Length=4775223 Score = 120 bits (132), Expect = 4e-22 Identities = 296/444 (67%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCT---AATCCAGGACATTCGTCAGGACACATCAAC 79917 |||||||| ||| ||| ||| ||||| | || || ||||||| || ||||| | Sbjct 4664104 TCGAACTC--CTCGCCATACA-CGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGG 4664048 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | ||| || | | || || || ||||| || || || |||||||| ||||| Sbjct 4664047 GTCCAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAG 4663988 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || || | | | ||||| ||||| ||||| ||| |||||||| Sbjct 4663987 AACAGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTG 4663928 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||| | |||||||| || | ||| ||||| | | ||||| || ||||| || Sbjct 4663927 AACACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCG 4663868 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | || ||||| || || || | | ||| ||||| | ||||||| Sbjct 4663867 CCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTG 4663808 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATA 80215 || || ||||| |||| || ||||| || ||||||| || | |||| Sbjct 4663807 CTGGTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGA-- 4663750 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 |||| || || || || | |||||||| | ||||| || | ||| || ||||||| Sbjct 4663749 GACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGC 4663690 Query 80276 CCTCTATGCTATCATCAATCATGT 80299 |||| ||||| || || |||||| Sbjct 4663689 CCTCGATGCTGTCCTCCTTCATGT 4663666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268539627560