Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 6e-33
seq4 123 4e-23
>seq6
Length=2952248
Score = 156 bits (172), Expect = 6e-33
Identities = 295/433 (68%), Gaps = 17/433 (4%)
Strand=Plus/Minus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||| | || ||||||||||| ||||| |||||||| || ||| || |||||||
Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
|||||||||||||| || ||||||||||| || || | |||||| | || || ||
Sbjct 1057414 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGT 1057355
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605
|||||||| | ||| ||||||||| || ||||| ||||| | | |
Sbjct 1057354 GACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACAT----------CAA 1057305
Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
|| | ||||| ||| ||| || ||| | ||||| || ||| || || |
Sbjct 1057304 GTCGAAGCCCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAA 1057245
Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725
||||| || || || | || || ||| | || | ||||||||| ||| || |||||
Sbjct 1057244 GGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTG 1057185
Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---T 125782
| ||||||| ||||| || || || || || ||| | | ||||| |||||
Sbjct 1057184 CCAGTACATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCTCTTGGCAACAAGAAGTA 1057128
Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842
|||||||| | || ||||| || |||||| | ||| || || | || ||||||||
Sbjct 1057127 CTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAA 1057068
Query 125843 CTTTTTCGAGAAG 125855
||| |||||||||
Sbjct 1057067 CTTCTTCGAGAAG 1057055
Score = 134 bits (148), Expect = 2e-26
Identities = 233/335 (70%), Gaps = 8/335 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||| || || ||||| | || ||| | || ||
Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | ||| | | || |||||| || || |||
Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCG 1057816
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| | | || ||||| |||| || ||||| ||||| ||||| || ||| | ||
Sbjct 1057815 CACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCGC 1057756
Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||| ||| ||| | ||||| |||| ||||| ||||| ||||| ||||||||
Sbjct 1057755 TTCAGCTC-CGAGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 1057697
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314
|||||| | ||||| || | ||||| ||||| |||| |||||| |||| ||
Sbjct 1057696 GGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGCCCAA 1057637
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349
||| || || || || || ||||| |||||||
Sbjct 1057636 GCAGCGCAACTAC---CTGTTCAACGCTATCGACA 1057605
>seq4
Length=4775223
Score = 123 bits (136), Expect = 4e-23
Identities = 344/517 (67%), Gaps = 8/517 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | || ||| || | || |||||| | | ||||| || || ||||
Sbjct 4663794 ACCAACGGCACCAGCAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTG-CACG 4663852
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| |||||||| || || || || ||||| | ||| ||||| | || || ||
Sbjct 4663853 CTACGTTGACCAGGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGAGCCGTG 4663912
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| || || || || |||| | ||||| ||| || || || | ||
Sbjct 4663913 GCACGCCGATGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGAAGTCCG 4663972
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | ||| |||| || || |||||| | || || ||||||||||||| ||| | |
Sbjct 4663973 CGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGCA 4664032
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
||| |||| ||| ||||||||| || | || |||||| | || | ||
Sbjct 4664033 GAACGGCACTTGGACCCTCATGTGCCCCAACGAATGCCCGGGTCTGGCAGACGTGTATGG 4664092
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164
||| ||||| ||||| ||| | |||||| | |||||||| || ||||| |
Sbjct 4664093 CGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGAC-TG 4664151
Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223
|| || | |||| |||||| | || || | |||||| || |||||||| | ||
Sbjct 4664152 TCCGGGCGC-AGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCCC 4664210
Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCAT 97282
| ||| | |||||||| | || ||||| |||||||| | | ||| ||||||||
Sbjct 4664211 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAATCTT-GGCACCAT 4664269
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
|||| || || ||| || || || ||||||
Sbjct 4664270 TCGCAGCTCTAACCTTTGCTGCGAGATCGTCGAGTAC 4664306
Score = 109 bits (120), Expect = 8e-19
Identities = 159/218 (73%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121
|||||||||| ||||| || || || || ||||||||| | |||| || | ||||||
Sbjct 1682429 AAGAGGGCGACCTGGGCCCGGTATATGGCTTCCAGTGGCGACACTTCGGAGCAGAGTATG 1682370
Query 70122 TAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGA 70179
| || ||||| |||||||||| |||| || |||||||| || || || || |||| ||
Sbjct 1682369 TGGA-TGCGAAGACAGACTATACGGGCCAAGGTGTTGACCAGTTGGCCGA-TGTCATCGA 1682312
Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239
|| || |||| ||| || || | | ||| | ||| || |||||||||| |||||
Sbjct 1682311 CAAGCTGAAGAACAAGCCGTATGACCGCCGCATCATCATGAGCGCATGGAATCCGGCAGA 1682252
Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTG 70276
|| | | ||||| || || || || ||| ||||||
Sbjct 1682251 CCTGAAGAAGATGGCCCTGCCCCCTTGCCACATGTTTG 1682214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058931366040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |