Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 156 6e-33 seq4 123 4e-23 >seq6 Length=2952248 Score = 156 bits (172), Expect = 6e-33 Identities = 295/433 (68%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||| | || ||||||||||| ||||| |||||||| || ||| || ||||||| Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 |||||||||||||| || ||||||||||| || || | |||||| | || || || Sbjct 1057414 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGT 1057355 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 |||||||| | ||| ||||||||| || ||||| ||||| | | | Sbjct 1057354 GACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACAT----------CAA 1057305 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 || | ||||| ||| ||| || ||| | ||||| || ||| || || | Sbjct 1057304 GTCGAAGCCCAGCCCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAA 1057245 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || || | || || ||| | || | ||||||||| ||| || ||||| Sbjct 1057244 GGAGTTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTG 1057185 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---T 125782 | ||||||| ||||| || || || || || ||| | | ||||| ||||| Sbjct 1057184 CCAGTACATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCTCTTGGCAACAAGAAGTA 1057128 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 |||||||| | || ||||| || |||||| | ||| || || | || |||||||| Sbjct 1057127 CTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAA 1057068 Query 125843 CTTTTTCGAGAAG 125855 ||| ||||||||| Sbjct 1057067 CTTCTTCGAGAAG 1057055 Score = 134 bits (148), Expect = 2e-26 Identities = 233/335 (70%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | || ||| | || || Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | || |||||| || || ||| Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGCTTCTTCATCTCG 1057816 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| |||| || ||||| ||||| ||||| || ||| | || Sbjct 1057815 CACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCGC 1057756 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| ||| | ||||| |||| ||||| ||||| ||||| |||||||| Sbjct 1057755 TTCAGCTC-CGAGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 1057697 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314 |||||| | ||||| || | ||||| ||||| |||| |||||| |||| || Sbjct 1057696 GGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGCCCAA 1057637 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 ||| || || || || || ||||| ||||||| Sbjct 1057636 GCAGCGCAACTAC---CTGTTCAACGCTATCGACA 1057605 >seq4 Length=4775223 Score = 123 bits (136), Expect = 4e-23 Identities = 344/517 (67%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | || ||| || | || |||||| | | ||||| || || |||| Sbjct 4663794 ACCAACGGCACCAGCAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTG-CACG 4663852 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| |||||||| || || || || ||||| | ||| ||||| | || || || Sbjct 4663853 CTACGTTGACCAGGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGAGCCGTG 4663912 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || || || |||| | ||||| ||| || || || | || Sbjct 4663913 GCACGCCGATGTGTTCAGTTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGAAGTCCG 4663972 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| |||| || || |||||| | || || ||||||||||||| ||| | | Sbjct 4663973 CGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGAGCA 4664032 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| |||| ||| ||||||||| || | || |||||| | || | || Sbjct 4664033 GAACGGCACTTGGACCCTCATGTGCCCCAACGAATGCCCGGGTCTGGCAGACGTGTATGG 4664092 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 ||| ||||| ||||| ||| | |||||| | |||||||| || ||||| | Sbjct 4664093 CGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGAC-TG 4664151 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || || | |||| |||||| | || || | |||||| || |||||||| | || Sbjct 4664152 TCCGGGCGC-AGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCCC 4664210 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCAT 97282 | ||| | |||||||| | || ||||| |||||||| | | ||| |||||||| Sbjct 4664211 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAATCTT-GGCACCAT 4664269 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| || || ||| || || || |||||| Sbjct 4664270 TCGCAGCTCTAACCTTTGCTGCGAGATCGTCGAGTAC 4664306 Score = 109 bits (120), Expect = 8e-19 Identities = 159/218 (73%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||||||||| ||||| || || || || ||||||||| | |||| || | |||||| Sbjct 1682429 AAGAGGGCGACCTGGGCCCGGTATATGGCTTCCAGTGGCGACACTTCGGAGCAGAGTATG 1682370 Query 70122 TAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGA 70179 | || ||||| |||||||||| |||| || |||||||| || || || || |||| || Sbjct 1682369 TGGA-TGCGAAGACAGACTATACGGGCCAAGGTGTTGACCAGTTGGCCGA-TGTCATCGA 1682312 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || || | | ||| | ||| || |||||||||| ||||| Sbjct 1682311 CAAGCTGAAGAACAAGCCGTATGACCGCCGCATCATCATGAGCGCATGGAATCCGGCAGA 1682252 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTG 70276 || | | ||||| || || || || ||| |||||| Sbjct 1682251 CCTGAAGAAGATGGCCCTGCCCCCTTGCCACATGTTTG 1682214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058931366040