Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 7e-17
>seq3
Length=5700105
Score = 102 bits (112), Expect = 7e-17
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| || || || || |||||| ||||||||||| || | | | || || | ||||
Sbjct 1597754 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTG-CGACCATCCT 1597812
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
||||||||||||| || |||| | ||||||||| ||| || | || |||||||||
Sbjct 1597813 CCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCT 1597872
Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
|| || ||| | | | || ||||| |||| ||| ||| ||||| || |||||
Sbjct 1597873 GGATCTTGCTCTTCACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGT 1597930
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| || || || |||||||||||
Sbjct 1597931 CTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
|| || ||| |||||| || |||||||| || | | | || || |||||||||||||
Sbjct 1597989 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTG-CGACCGTCCTCCAGCTG 1598047
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || | || | |||||||| ||| || | || ||||||||| ||| ||
Sbjct 1598048 CTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 1598107
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || |||||||| | ||||| || | || ||||| || |||
Sbjct 1598108 GCTCTTGACGTTGTCG--ATGGTATCCGACGACTCAACTTCCAAGGTGATGGTCTTGCCG 1598165
Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || || || || ||||||||
Sbjct 1598166 GTGAGCGTCTTGACGAAGATCTGCAT 1598191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251051114029
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |