Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 >seq3 Length=5700105 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || || |||||| ||||||||||| || | | | || || | |||| Sbjct 1597754 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTG-CGACCATCCT 1597812 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||||||||||||| || |||| | ||||||||| ||| || | || ||||||||| Sbjct 1597813 CCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCT 1597872 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||| | | | || ||||| |||| ||| ||| ||||| || ||||| Sbjct 1597873 GGATCTTGCTCTTCACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGCGTGATGGT 1597930 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || || ||||||||||| Sbjct 1597931 CTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || | | | || || ||||||||||||| Sbjct 1597989 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTG-CGACCGTCCTCCAGCTG 1598047 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || | |||||||| ||| || | || ||||||||| ||| || Sbjct 1598048 CTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 1598107 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || |||||||| | ||||| || | || ||||| || ||| Sbjct 1598108 GCTCTTGACGTTGTCG--ATGGTATCCGACGACTCAACTTCCAAGGTGATGGTCTTGCCG 1598165 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || |||||||| Sbjct 1598166 GTGAGCGTCTTGACGAAGATCTGCAT 1598191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251051114029