Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-20 seq2 93.3 7e-15 >seq9 Length=1960077 Score = 111 bits (122), Expect = 2e-20 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| |||| Sbjct 1194869 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 1194811 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| ||||| |||||||||||||| ||||||||| |||| Sbjct 1194810 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 1194771 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| ||||| ||||||| || || |||| ||| | Sbjct 1194705 TGATCTACGAGGAGACCCGTGGTGTCCTGAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 1194646 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| |||| ||||||| | Sbjct 1194645 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTACG 1194586 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 1194585 CCCTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1194542 >seq2 Length=6116231 Score = 93.3 bits (102), Expect = 7e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | |||| ||||||| || || |||| ||| | Sbjct 4342847 TGATCTACGAGGAGACCCGTGGTGTCCTTAAGACCTTCCTCGAGGGTGTCATCCGTGACG 4342788 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| | Sbjct 4342787 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 4342728 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || | |||||||||| | || ||||| || ||||| Sbjct 4342727 CCCTCAAGAGGCAAGGCCGTACCCTCTACGGTTTCGGCGGTTAA 4342684 Score = 91.5 bits (100), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || || |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 4342989 AGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTCGCTCGC 4342931 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||| || ||||||||| |||||| Sbjct 4342930 CGTGGCGGTGTCAAGCGTATCTCTG 4342906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075173485097