Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq9 111 2e-20
seq2 93.3 7e-15
>seq9
Length=1960077
Score = 111 bits (122), Expect = 2e-20
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| ||||
Sbjct 1194869 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 1194811
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
|||| ||||| |||||||||||||| ||||||||| ||||
Sbjct 1194810 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 1194771
Score = 89.7 bits (98), Expect = 8e-14
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| ||| ||||| ||||||| || || |||| ||| |
Sbjct 1194705 TGATCTACGAGGAGACCCGTGGTGTCCTGAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 1194646
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| |||| ||||||| |
Sbjct 1194645 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTACG 1194586
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||| | | || ||||| || |||||
Sbjct 1194585 CCCTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1194542
>seq2
Length=6116231
Score = 93.3 bits (102), Expect = 7e-15
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| ||| | |||| ||||||| || || |||| ||| |
Sbjct 4342847 TGATCTACGAGGAGACCCGTGGTGTCCTTAAGACCTTCCTCGAGGGTGTCATCCGTGACG 4342788
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| |
Sbjct 4342787 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 4342728
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || | |||||||||| | || ||||| || |||||
Sbjct 4342727 CCCTCAAGAGGCAAGGCCGTACCCTCTACGGTTTCGGCGGTTAA 4342684
Score = 91.5 bits (100), Expect = 2e-14
Identities = 72/85 (85%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||||| | || || |||||||| || ||||||||||| || ||||||||||| |||||
Sbjct 4342989 AGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTCGCTCGC 4342931
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||| || ||||||||| ||||||
Sbjct 4342930 CGTGGCGGTGTCAAGCGTATCTCTG 4342906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075173485097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |