Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 2e-36
seq10 129 6e-25
seq3 127 2e-24
seq2 98.7 9e-16
seq5 96.9 3e-15
>seq6
Length=2952248
Score = 167 bits (184), Expect = 2e-36
Identities = 340/500 (68%), Gaps = 9/500 (2%)
Strand=Plus/Minus
Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158
||||| |||||||||| | |||||| | || | | | || ||||| ||||
Sbjct 1057534 AAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAACTCTACCTTCGCTTCGCGT 1057475
Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218
|| | ||||| || || ||||| |||| || ||| ||| || |||||||
Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415
Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277
| |||| || | || | ||||||||||||| || || |||||||| || || ||
Sbjct 1057414 TGGCTCAAGAAGCGTGGTC-TCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCG 1057356
Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGAC 46335
|||||||| |||| || |||||||| || || || | | ||| || || | | |
Sbjct 1057355 TGACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCC 1057296
Query 46336 AAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAG 46395
||| || || |||| || || | | ||||| |||| || |||||||||
Sbjct 1057295 CAGC-----CCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAG 1057241
Query 46396 TTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGAC 46455
|| | |||| || ||||||| |||||||||||||||||||| | |||||| |
Sbjct 1057240 TTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAG 1057181
Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515
||||||||||| || || ||||| ||||| ||| ||| | | |||| | | ||
Sbjct 1057180 TACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTTGGCAACAAGAAGTACTACAAC 1057121
Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575
||| ||| || || || || ||| | |||||||| || | ||||| || || || |||
Sbjct 1057120 GCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTC 1057061
Query 46576 GAAAAGCGCGTCGGCGAGTA 46595
|| |||||||| || || ||
Sbjct 1057060 GAGAAGCGCGTTGGTGACTA 1057041
>seq10
Length=1499934
Score = 129 bits (142), Expect = 6e-25
Identities = 302/446 (68%), Gaps = 15/446 (3%)
Strand=Plus/Minus
Query 145721 TGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCC 145780
||||| || || || |||||||| ||||||||||| |||| | ||| ||||| || |||
Sbjct 1070871 TGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCCGCCCGTGTCC 1070812
Query 145781 ACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAG 145837
| ||| | ||| ||||| | || || || ||| |||| ||| ||| || || |
Sbjct 1070811 AGCTGGGCCTCGACGATGG--CCGTCCACAGCTCCCGCGCCTTGACCGTGCGGC-GGCCG 1070755
Query 145838 CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGAC 145897
| ||||| ||||| | ||||||| | | ||| ||| || |||||||||
Sbjct 1070754 CATCCCTCGCTCTCGTACCGCTCGTAGAGCGCGCCGAACTCGGCCCCATAGCAATCGACG 1070695
Query 145898 AGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCC 145957
|| ||||| |||| | || |||||||||| ||| ||| | |||| ||||||| |
Sbjct 1070694 AGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCGATCCGCGTCGACGCGCCGC 1070635
Query 145958 ATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA-ATCCTCAGC 146016
|| |||| || || |||||||||||||| || || ||||| ||| |||||
Sbjct 1070634 ATGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGC-CCGCAGCTCCTCCTT 1070576
Query 146017 ACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATA 146076
|| | | | || || || || | ||| ||| ||||||||||| || | ||
Sbjct 1070575 GCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGCTCCAGGTA 1070516
Query 146077 GACGGCGAG--GGCTCCTTTTCGTTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTA 146134
||| ||||| ||| || || | | ||| | || | || || ||| |||
Sbjct 1070515 GACAGCGAGATTGCTACTGTTGCTGCTGCTCCCAG-----CGAGGCGCGCCGTGTCGTTG 1070461
Query 146135 AAGACGCGCACCATGGGCTCGACGCC 146160
|||||||||| ||||||| |||||||
Sbjct 1070460 AAGACGCGCAGCATGGGCACGACGCC 1070435
>seq3
Length=5700105
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| ||| ||||| || || | |||||||||||| ||||||||||| ||
Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| ||||| ||||| |||||||| || ||| | || | ||||||||||||||| ||
Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| || ||| | | || | || |||| || || |
Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||||||||||||
Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||||||| | || | || |||||||| || |||||||| ||
Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| |||||||| || ||| |||| | |||||||||||||| |||
Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | ||||| | ||||| |
Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||| || || || | || | |||||||||||| || ||||||||||| |
Sbjct 1598477 CCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 1598536
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| ||||||||||| ||| |||| | ||||||||| ||||||||
Sbjct 1598537 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGA 1598596
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || ||| || ||| | | || | || |||| |||||||
Sbjct 1598597 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACC 1598656
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | ||| | ||| || |||||
Sbjct 1598657 TCAAGGGTGATGGTCTTGCCGGT 1598679
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
|||||| || |||||||| ||| || ||| || |||||| ||||||||||| ||| |
Sbjct 1598228 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1598287
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
||| | |||||||| |||||||| || || || ||||| ||| || ||||| |
Sbjct 1598288 GATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 1598347
Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210
|| | || || | |||||||| || | ||| | ||| || |||||
Sbjct 1598348 GTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGT 1598395
>seq2
Length=6116231
Score = 98.7 bits (108), Expect = 9e-16
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || ||||| | || | ||| |||||||| || |||||||| ||
Sbjct 4767946 CCACCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 4767887
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| ||||||||||| ||| |||| | ||||||||||||||| |||
Sbjct 4767886 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 4767827
Query 131128 ATTCCTTCTTTGTCGGT 131144
|| || || ||||| ||
Sbjct 4767826 ATGCCCTCCTTGTCTGT 4767810
>seq5
Length=4159236
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| || |||||| ||||| ||||||||||| ||| |||
Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | |||||||||||||| || || || || ||||| ||| || ||||| | |
Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| || | ||| | ||| || || || || || || ||||
Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234
Query 131225 A 131225
|
Sbjct 355235 A 355235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012628895360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |