Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 167 2e-36 seq10 129 6e-25 seq3 127 2e-24 seq2 98.7 9e-16 seq5 96.9 3e-15 >seq6 Length=2952248 Score = 167 bits (184), Expect = 2e-36 Identities = 340/500 (68%), Gaps = 9/500 (2%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| | |||||| | || | | | || ||||| |||| Sbjct 1057534 AAGAAGGCCGACTGGGCTCTCCGCTGGATCTGCGACAAGAACTCTACCTTCGCTTCGCGT 1057475 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 || | ||||| || || ||||| |||| || ||| ||| || ||||||| Sbjct 1057474 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTC 1057415 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | ||||||||||||| || || |||||||| || || || Sbjct 1057414 TGGCTCAAGAAGCGTGGTC-TCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCG 1057356 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGAC 46335 |||||||| |||| || |||||||| || || || | | ||| || || | | | Sbjct 1057355 TGACGAGGGAATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCC 1057296 Query 46336 AAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAG 46395 ||| || || |||| || || | | ||||| |||| || ||||||||| Sbjct 1057295 CAGC-----CCTGAGGCCGTCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAG 1057241 Query 46396 TTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGAC 46455 || | |||| || ||||||| |||||||||||||||||||| | |||||| | Sbjct 1057240 TTCCTCACGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAG 1057181 Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515 ||||||||||| || || ||||| ||||| ||| ||| | | |||| | | || Sbjct 1057180 TACATCGAGTTCGTCGCCGACCGCCTGCTGGTGGCTCTTGGCAACAAGAAGTACTACAAC 1057121 Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575 ||| ||| || || || || ||| | |||||||| || | ||||| || || || ||| Sbjct 1057120 GCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTC 1057061 Query 46576 GAAAAGCGCGTCGGCGAGTA 46595 || |||||||| || || || Sbjct 1057060 GAGAAGCGCGTTGGTGACTA 1057041 >seq10 Length=1499934 Score = 129 bits (142), Expect = 6e-25 Identities = 302/446 (68%), Gaps = 15/446 (3%) Strand=Plus/Minus Query 145721 TGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCC 145780 ||||| || || || |||||||| ||||||||||| |||| | ||| ||||| || ||| Sbjct 1070871 TGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCCGCCCGTGTCC 1070812 Query 145781 ACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAG 145837 | ||| | ||| ||||| | || || || ||| |||| ||| ||| || || | Sbjct 1070811 AGCTGGGCCTCGACGATGG--CCGTCCACAGCTCCCGCGCCTTGACCGTGCGGC-GGCCG 1070755 Query 145838 CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGAC 145897 | ||||| ||||| | ||||||| | | ||| ||| || ||||||||| Sbjct 1070754 CATCCCTCGCTCTCGTACCGCTCGTAGAGCGCGCCGAACTCGGCCCCATAGCAATCGACG 1070695 Query 145898 AGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCC 145957 || ||||| |||| | || |||||||||| ||| ||| | |||| ||||||| | Sbjct 1070694 AGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCGATCCGCGTCGACGCGCCGC 1070635 Query 145958 ATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCA-ATCCTCAGC 146016 || |||| || || |||||||||||||| || || ||||| ||| ||||| Sbjct 1070634 ATGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGC-CCGCAGCTCCTCCTT 1070576 Query 146017 ACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATA 146076 || | | | || || || || | ||| ||| ||||||||||| || | || Sbjct 1070575 GCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGCTCCAGGTA 1070516 Query 146077 GACGGCGAG--GGCTCCTTTTCGTTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTA 146134 ||| ||||| ||| || || | | ||| | || | || || ||| ||| Sbjct 1070515 GACAGCGAGATTGCTACTGTTGCTGCTGCTCCCAG-----CGAGGCGCGCCGTGTCGTTG 1070461 Query 146135 AAGACGCGCACCATGGGCTCGACGCC 146160 |||||||||| ||||||| ||||||| Sbjct 1070460 AAGACGCGCAGCATGGGCACGACGCC 1070435 >seq3 Length=5700105 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| || || | |||||||||||| ||||||||||| || Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| |||||||| || ||| | || | ||||||||||||||| || Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | || |||| || || | Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| | || | || |||||||| || |||||||| || Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||| | ||||| | Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | |||||||||||| || ||||||||||| | Sbjct 1598477 CCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 1598536 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||||||||| |||||||| Sbjct 1598537 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGA 1598596 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | || |||| ||||||| Sbjct 1598597 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACC 1598656 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 1598657 TCAAGGGTGATGGTCTTGCCGGT 1598679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||| || ||| || |||||| ||||||||||| ||| | Sbjct 1598228 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1598287 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||| |||||||| || || || ||||| ||| || ||||| | Sbjct 1598288 GATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATT 1598347 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 || | || || | |||||||| || | ||| | ||| || ||||| Sbjct 1598348 GTCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGT 1598395 >seq2 Length=6116231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||| |||||||| || |||||||| || Sbjct 4767946 CCACCACGCAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 4767887 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||||||||||||||| ||| Sbjct 4767886 AGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 4767827 Query 131128 ATTCCTTCTTTGTCGGT 131144 || || || ||||| || Sbjct 4767826 ATGCCCTCCTTGTCTGT 4767810 >seq5 Length=4159236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || |||||| ||||| ||||||||||| ||| ||| Sbjct 355055 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 355114 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 355115 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 355174 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | ||| || || || || || || |||| Sbjct 355175 CGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 355234 Query 131225 A 131225 | Sbjct 355235 A 355235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012628895360