Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 >seq4 Length=4775223 Score = 118 bits (130), Expect = 1e-21 Identities = 292/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || | || | |||| || || ||||| | || ||||| | | | Sbjct 4664104 TCGAACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTC 4664045 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || |||| | || || || ||||| || || || |||||||| ||||| || Sbjct 4664044 CAAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAAC 4663985 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | | | |||||| ||||| ||||| ||| |||||||| | Sbjct 4663984 AGGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAAC 4663925 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| | |||||||| || | ||| ||||| | | || || || ||||| || ||| Sbjct 4663924 ACATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCC 4663865 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | || ||||| || || || | | ||| ||||| | ||||||| Sbjct 4663864 TGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTG 4663805 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGAC 63350 || || ||||| || | || ||||| || ||||||| || | |||| ||| Sbjct 4663804 GTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGA--GAC 4663747 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | |||||||| | ||||| || | ||| || |||||||||| Sbjct 4663746 CGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCT 4663687 Query 63411 CTATACTATCATCCATCATGT 63431 | || || || ||| |||||| Sbjct 4663686 CGATGCTGTCCTCCTTCATGT 4663666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631770308400