Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq4 100 2e-16 seq5 98.7 8e-16 seq2 84.2 2e-11 >seq3 Length=5700105 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || || |||||| | || Sbjct 1597963 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACGCTCGAGGTGGAATCTTCC 1597904 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || |||||||||||||| || || || || Sbjct 1597903 GACACCATCGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1597844 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||||| |||| || |||||| Sbjct 1597843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTCTCGGACTACAAC 1597784 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || || || | || |||| || || Sbjct 1597783 ATTCAGAAGGAGTCGACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 1597737 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || | || ||| | ||| || |||| Sbjct 1598395 ACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGTCC 1598336 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || ||||| || || || || || |||||||| Sbjct 1598335 AAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 1598276 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| | ||||| ||| ||| | ||||| |||||||| || || || Sbjct 1598275 CAGCTCGAGGACGGCCGTACCCTGTCCGACTACAACATCCAGAAGGA 1598229 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || | |||| ||| | ||| | | || Sbjct 1598679 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTGAAGAGC 1598620 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || ||||| || ||||| || ||||| || |||||||| || || ||||| Sbjct 1598619 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAG 1598560 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| ||| | || ||||||||||| || || || || ||| | || Sbjct 1598559 CAGCTCGAGGATGGCCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCGACCCTTCAC 1598500 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||||| ||| Sbjct 1598499 CTCGTCCTCCGCCTGCGCGGTGGT 1598476 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| | ||||| || | | Sbjct 1598191 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCTTGGAAGTTGAGTCGTCG 1598132 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 1598131 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAG 1598072 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | ||||| ||||| |||| || |||||| Sbjct 1598071 CAGCGCCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGCACTCTCTCGGACTACAAC 1598012 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 1598011 ATCCAGAAGGAGTCCAC 1597995 >seq4 Length=4775223 Score = 100 bits (110), Expect = 2e-16 Identities = 258/388 (66%), Gaps = 9/388 (2%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 ||||| || ||||| |||| ||||| | ||| || ||||| |||| || ||||| Sbjct 4664029 TCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGCGG 4663970 Query 130075 CTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 ||||| || ||| || | || || |||||| | | | |||||||||| Sbjct 4663969 ACTTCCTCCTTTCCGTGGTTC--TTGCGAAGGTCGAGGAAACTGAACACATCGGCGTGCC 4663912 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGC 130189 |||| |||| || || || | |||||| || ||| || || |||||||||| || Sbjct 4663911 ACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTAGC 4663852 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 | | | ||||||||||| || | ||| | || || ||| |||||||| || | Sbjct 4663851 GTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTGGTGCCGTTGGTAC 4663792 Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAA 130309 ||||| | ||||| || || | | || ||| | ||||| ||||| || | Sbjct 4663791 CGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAGCGG 4663732 Query 130310 ATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCT 130368 || || |||| ||||| || | ||||| || || ||||| |||| ||||| || Sbjct 4663731 TCTTAGAGATCATGGCGCAGGTCTTG-AGCGTGTCGTAGATGCCCTCGATGCTGTCCTCC 4663673 Query 130369 TTAATGTTTAGGAGGAAACACGAGGCCA 130396 || |||| | |||||| || || |||| Sbjct 4663672 TTCATGTCGATGAGGAAGCAAGATGCCA 4663645 >seq5 Length=4159236 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | || ||| | ||| || |||| Sbjct 355220 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGAGC 355161 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || || |||||||| Sbjct 355160 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 355101 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| | ||||| |||||||| || || Sbjct 355100 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 355057 >seq2 Length=6116231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| || || || || || || ||||| || || || ||||| ||| | || Sbjct 4767812 AGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGA 4767871 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 |||| ||| ||| |||| || |||||||| || || || |||||| Sbjct 4767872 GGATGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACC 4767917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727851652385