Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 3e-19
seq6 100 6e-16
>seq5
Length=4159236
Score = 111 bits (122), Expect = 3e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| ||||| |||| |||||| || || || |||| ||||| ||||| |||
Sbjct 1557126 GGTGAGGACCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTCAAC 1557185
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | |||||||| | || || ||||| |||| ||||| || |
Sbjct 1557186 CAGACTCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 1557245
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| |||| ||| || ||||||||||| |||| ||||| | ||| ||||| | |||
Sbjct 1557246 GGCAAGACCACCCTGATGCGCGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 1557304
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
|| ||||| | ||| || || || ||||||||| | ||||||
Sbjct 1557305 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTTGACTCC 1557347
Score = 91.5 bits (100), Expect = 3e-13
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG-CCGA 279763
|| || ||||||||||||||||||||||| || | || ||| ||| | | | ||||
Sbjct 1557489 CTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCC-GTCTTCGAGGAGCCCGA 1557547
Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823
| | || |||||||| ||||| ||||||||| ||||| || ||||| || ||||| |
Sbjct 1557548 TATTCTTCTGCTTGACGAGCCCACCAACCACTTGGACGTCAAGAACGTTGCTTGGCTCGA 1557607
Query 279824 GTCCTACCTAACCA 279837
| |||||| ||||
Sbjct 1557608 GAACTACCTCACCA 1557621
>seq6
Length=2952248
Score = 100 bits (110), Expect = 6e-16
Identities = 268/403 (67%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||
Sbjct 1057059 TCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 1057118
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| | ||| | |||||| || || | | |||||| || || ||||| |
Sbjct 1057119 GCGTTGTAGTACTTCTTGTTGCCAAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATG 1057178
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || | | ||||||||| | || |||| || | || || ||
Sbjct 1057179 TACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCGAC-GGGCAGCGCATCCGTGAG 1057237
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG---A 251798
||| ||||| ||| | | || ||||| | ||| |||| | ||| ||
Sbjct 1057238 GAACTCCTTCTCGATATCCACAGCCTCGGTAATAAT---CTTCTCGACGGCCTCAGGGCT 1057294
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
|||| || | | ||| |||| || | |||| | ||||| ||||||||
Sbjct 1057295 GGGCTTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATTCCCTCGTC 1057354
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
|| ||||| |||||| || | ||||| ||||| | ||||| ||| |||||||
Sbjct 1057355 ACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 1057414
Query 251919 GAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960
|||||| | || ||| || || ||| | | |||||||||
Sbjct 1057415 GAAGATGGATGCGAAA-GAGCCGCTGAAGAAGATACCCTCGAC 1057456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836418094389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |