Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 111 3e-19 seq6 100 6e-16 >seq5 Length=4159236 Score = 111 bits (122), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| |||||| || || || |||| ||||| ||||| ||| Sbjct 1557126 GGTGAGGACCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTCAAC 1557185 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||| | || || ||||| |||| ||||| || | Sbjct 1557186 CAGACTCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 1557245 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||||||||| |||| ||||| | ||| ||||| | ||| Sbjct 1557246 GGCAAGACCACCCTGATGCGCGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 1557304 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || || || ||||||||| | |||||| Sbjct 1557305 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTTGACTCC 1557347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG-CCGA 279763 || || ||||||||||||||||||||||| || | || ||| ||| | | | |||| Sbjct 1557489 CTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCC-GTCTTCGAGGAGCCCGA 1557547 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | | || |||||||| ||||| ||||||||| ||||| || ||||| || ||||| | Sbjct 1557548 TATTCTTCTGCTTGACGAGCCCACCAACCACTTGGACGTCAAGAACGTTGCTTGGCTCGA 1557607 Query 279824 GTCCTACCTAACCA 279837 | |||||| |||| Sbjct 1557608 GAACTACCTCACCA 1557621 >seq6 Length=2952248 Score = 100 bits (110), Expect = 6e-16 Identities = 268/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 1057059 TCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 1057118 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | ||| | |||||| || || | | |||||| || || ||||| | Sbjct 1057119 GCGTTGTAGTACTTCTTGTTGCCAAGAGCCACCAGCAGGCGGTCGGCGACGAACTCGATG 1057178 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | || |||| || | || || || Sbjct 1057179 TACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCGAC-GGGCAGCGCATCCGTGAG 1057237 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG---A 251798 ||| ||||| ||| | | || ||||| | ||| |||| | ||| || Sbjct 1057238 GAACTCCTTCTCGATATCCACAGCCTCGGTAATAAT---CTTCTCGACGGCCTCAGGGCT 1057294 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | | ||| |||| || | |||| | ||||| |||||||| Sbjct 1057295 GGGCTTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATTCCCTCGTC 1057354 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| |||||| || | ||||| ||||| | ||||| ||| ||||||| Sbjct 1057355 ACGGGAGATGAGCTCGTTCGAGAAGGTAAGGCCGGGCATGAGACCACGCTTCTTGAGCCA 1057414 Query 251919 GAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| | || ||| || || ||| | | ||||||||| Sbjct 1057415 GAAGATGGATGCGAAA-GAGCCGCTGAAGAAGATACCCTCGAC 1057456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389