Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3 170 4e-37
seq5 143 5e-29
seq4 102 2e-16
>seq3
Length=5700105
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||| ||| || |||||||| || |||||||| || || |||
Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || ||||| || ||
Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| ||||||| |||||||| || | || || |||
Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| || || ||||| ||||||||||| ||||||||
Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || || ||||| || || |||
Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || ||||| || ||
Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||| ||| ||||||||||| | ||||| ||
Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACC 1597916
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 1597917 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 132 bits (146), Expect = 9e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || ||| ||| || |||||||| || |||||
Sbjct 1598193 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1598252
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || || || || |||
Sbjct 1598253 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGA 1598312
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| | |||||| ||||||||||| | || || ||
Sbjct 1598313 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACC 1598372
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450
|||| ||||||||| || || || | || |||||
Sbjct 1598373 TCCAGGGTGATGGTCTTGCCGGTCACTGTGATGACG 1598408
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | || | ||| || || ||||| || |||||||| ||||| ||
Sbjct 1598477 CCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 1598536
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| || ||||| || || | || || || || |||
Sbjct 1598537 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGA 1598596
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| || || ||||| ||| ||| ||||||||||| | || || ||
Sbjct 1598597 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACC 1598656
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 1598657 TCAAGGGTGATGGTCTTGCCGGTGA 1598681
>seq5
Length=4159236
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| || || | ||||| || | |||||| |||||||| ||
Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| || ||||| |||||| |||
Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||||||||||||||||||
Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235
Score = 141 bits (156), Expect = 2e-28
Identities = 668/1037 (64%), Gaps = 42/1037 (4%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | ||| || |||||| ||||| || || ||| ||| ||
Sbjct 1558135 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAAGTGGTGGTCGATGTGGGCGAAGGCG 1558076
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| || | | ||| ||| ||| ||
Sbjct 1558075 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGGTGGTAGACATCACCCGAAGTGGGG 1558016
Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || || || || || |||| ||| |||| |||||| ||||| ||||| |||||
Sbjct 1558015 ATGAGC-TCACCAGTCAGAACGTTGACGAGAGTAGACTTGCCAGCACCGTTGGGACCAAT 1557957
Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217
||| |||| ||||| || | ||| ||| || | | || | |||||| |||
Sbjct 1557956 GACGGCAATACGGGAGCCGAGAGAGCA--CTGGAAGGTGATGTCGG---AGATCTG-GGG 1557903
Query 225218 CC---AGTTT----GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTT 225270
| || | |||| |||| || | | | | || || | ||||
Sbjct 1557902 CTTGGAGGTACCGGGGTACTGGAAGGTCATGTTGCTGACACGGACAATAGCCTTGGCCTT 1557843
Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330
|| | | |||||| ||||| |||||||| ||||||| ||| || | | | |
Sbjct 1557842 GGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAACTTGAACTCCATCTCGGAGGCACC 1557783
Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGT-CGCT-TTGCCACGAAAGCAGACAGGTTTCCG 225388
|| ||||||||||| || ||| | || ||| ||||| |||| ||||| ||
Sbjct 1557782 GAGCTCGTAGTAAGACTTGGCAGAGGGAACCCTCTTG--ACGAACTCAGAGAGGTTACCA 1557725
Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTC 225447
||| | ||||||||| | || |||| || | || ||| | | || |||
Sbjct 1557724 CGGTAACGCTTGAGCTTGAAGCGCT---CGTAGTGGATAACGTGCTG-GATGACGTTGTC 1557669
Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGT 225506
| ||| ||||||||||| | |||||||| | || | | ||| | |||||
Sbjct 1557668 CAAGAACTTGGAGTCGTGGGAGATGATGATGGAGGTGCAAG---GGGAGGTGGT-GAGGT 1557613
Query 225507 GCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566
| |||||| || ||||| ||||||||| |||||| || || ||||| || || |
Sbjct 1557612 AGTTCTCGAGCCAAGCAACGTTCTTGACGTCCAAGTGGTTGGTGGGCTCGTCAAGCAGAA 1557553
Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626
| || || | || || || ||| || | |||| ||||||||| ||||| || || |
Sbjct 1557552 GAATATCGGGCTCCTCGAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCAG 1557493
Query 225627 ACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGT-CAAAGCCGTACTCCAGGAGCGT- 225684
| |||| | ||| | || | ||| ||| || | |||||| ||||| ||| ||
Sbjct 1557492 AGAGGGCGGTGATGGGGCCATCGAGCTG-GCTGCGAACGAAGCCGAACTCCTCGAGGGTG 1557434
Query 225685 --CTGGATAATGCGCTCGGGAGAGCTG---CGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739
|| || ||| ||| | || | ||||| || | | | | | |
Sbjct 1557433 TTCTCGACCTCAGGCTGGGGCTTGGTGACACCAGCGG--AC-TCGAGCTTCTTCATGGTC 1557377
Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799
| || || ||| || | | | | | ||||| |||||| || ||||| || |||
Sbjct 1557376 CAGCCAATGACAGTCTGCTCAGTGTCGGCGGAGTCAAGGTCGTGCTCGACGTAGACGGTC 1557317
Query 225800 CGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859
|| || || | |||||| ||||| ||||| | || || || || | ||||
Sbjct 1557316 TTGACCTCGGACTGCTTGGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCGCGCATCAGG 1557257
Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919
|| ||||||| | |||||||| |||| || |||||| | | || ||||| |
Sbjct 1557256 GTGGTCTTGCCGGAACCGTTGGGGCCGAGCAGACCGTAACGCTGACCACGCTTCAGACGA 1557197
Query 225920 AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCAC 225979
||| | || ||| || ||||||||| |||| ||||| |||||||| ||| | ||||
Sbjct 1557196 AGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCAC 1557137
Query 225980 AGGTCCTCACCCTCCTC 225996
|||||||||||||||||
Sbjct 1557136 AGGTCCTCACCCTCCTC 1557120
>seq4
Length=4775223
Score = 102 bits (112), Expect = 2e-16
Identities = 410/642 (64%), Gaps = 14/642 (2%)
Strand=Plus/Minus
Query 31419 GCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCA 31478
|| ||| |||||| |||| ||||| | |||||| | ||||||| || |||||
Sbjct 4664620 GCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAGTCG 4664561
Query 31479 AAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGG 31538
||||||||||| || | ||| | || |||||| | ||||||||| |||| |||
Sbjct 4664560 AAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGGGG 4664501
Query 31539 CGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTC 31598
|| | |||||||| || | | ||||| || | | |||| ||| ||| ||| ||
Sbjct 4664500 CGGTGACGCATGTTGCTCTTTCTAGCCTCAGGCACCGGGTAGTGGTTGATGTCGATGATC 4664441
Query 31599 TTGTCGAGGTTCTTGGCCAGAATCTTCACGTGCTTGCGAAGGTCCTCAAAGTCGTAGGCA 31658
|||| | |||||| | || | || | || | | || | | |||||||| |
Sbjct 4664440 TTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAAATA 4664381
Query 31659 CCGTTCTTGACGT------AGTTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTT 31712
||||||| ||||| || || | || | | | | | | || || || |
Sbjct 4664380 CCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACT 4664321
Query 31713 TCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATT---GCTGCCCGTGATGGTG 31769
|| || | | |||||| ||||| |||||| ||||| || ||||| ||||||
Sbjct 4664320 TCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGC---GAATGGTG 4664264
Query 31770 CCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATG 31829
|| ||| ||| || |||| ||| | |||||||| | || | | || ||
Sbjct 4664263 CCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTG 4664204
Query 31830 CCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGAC-GACTTT 31888
|| ||||||| || | || || || | ||| | | |||| ||| | ||
Sbjct 4664203 CCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCG 4664144
Query 31889 CTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGC 31948
| | |||| ||||| |||||| | || || ||||| |||||| |||| | |
Sbjct 4664143 CGGC-CACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACAC 4664085
Query 31949 ATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTAC 32008
|| | ||||| || || || |||||| | ||| | ||| | | | | ||| ||
Sbjct 4664084 GTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGAC 4664025
Query 32009 TCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAG 32050
|||||||||||||||||| | ||| | ||||| |||||
Sbjct 4664024 ACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAG 4663983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622065911880
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