Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq5 143 5e-29 seq4 102 2e-16 >seq3 Length=5700105 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || |||||||| || |||||||| || || ||| Sbjct 1597965 CCACCACGGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1598024 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 1598025 AGAGTGCGACCGTCCTCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1598084 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||| |||||||| || | || || ||| Sbjct 1598085 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTATCCGACGACTCAACT 1598144 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || ||||| ||||||||||| |||||||| Sbjct 1598145 TCCAAGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || ||||| || || ||| Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || ||||| || || Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| ||| ||||||||||| | ||||| || Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACC 1597916 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 1597917 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||| ||| || |||||||| || ||||| Sbjct 1598193 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1598252 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || ||| Sbjct 1598253 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGA 1598312 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | |||||| ||||||||||| | || || || Sbjct 1598313 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAGGACTCGACC 1598372 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||| ||||||||| || || || | || ||||| Sbjct 1598373 TCCAGGGTGATGGTCTTGCCGGTCACTGTGATGACG 1598408 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || || ||||| || |||||||| ||||| || Sbjct 1598477 CCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 1598536 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || ||||| || || | || || || || ||| Sbjct 1598537 AAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGGA 1598596 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| ||| ||| ||||||||||| | || || || Sbjct 1598597 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGACGACTCGACC 1598656 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 1598657 TCAAGGGTGATGGTCTTGCCGGTGA 1598681 >seq5 Length=4159236 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 355057 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 355116 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| || ||||| |||||| ||| Sbjct 355117 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 355176 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 355177 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 355235 Score = 141 bits (156), Expect = 2e-28 Identities = 668/1037 (64%), Gaps = 42/1037 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| || |||||| ||||| || || ||| ||| || Sbjct 1558135 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAAGTGGTGGTCGATGTGGGCGAAGGCG 1558076 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| || | | ||| ||| ||| || Sbjct 1558075 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGGTGGTAGACATCACCCGAAGTGGGG 1558016 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || || || || |||| ||| |||| |||||| ||||| ||||| ||||| Sbjct 1558015 ATGAGC-TCACCAGTCAGAACGTTGACGAGAGTAGACTTGCCAGCACCGTTGGGACCAAT 1557957 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 ||| |||| ||||| || | ||| ||| || | | || | |||||| ||| Sbjct 1557956 GACGGCAATACGGGAGCCGAGAGAGCA--CTGGAAGGTGATGTCGG---AGATCTG-GGG 1557903 Query 225218 CC---AGTTT----GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTT 225270 | || | |||| |||| || | | | | || || | |||| Sbjct 1557902 CTTGGAGGTACCGGGGTACTGGAAGGTCATGTTGCTGACACGGACAATAGCCTTGGCCTT 1557843 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 || | | |||||| ||||| |||||||| ||||||| ||| || | | | | Sbjct 1557842 GGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAACTTGAACTCCATCTCGGAGGCACC 1557783 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGT-CGCT-TTGCCACGAAAGCAGACAGGTTTCCG 225388 || ||||||||||| || ||| | || ||| ||||| |||| ||||| || Sbjct 1557782 GAGCTCGTAGTAAGACTTGGCAGAGGGAACCCTCTTG--ACGAACTCAGAGAGGTTACCA 1557725 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTC 225447 ||| | ||||||||| | || |||| || | || ||| | | || ||| Sbjct 1557724 CGGTAACGCTTGAGCTTGAAGCGCT---CGTAGTGGATAACGTGCTG-GATGACGTTGTC 1557669 Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGGT 225506 | ||| ||||||||||| | |||||||| | || | | ||| | ||||| Sbjct 1557668 CAAGAACTTGGAGTCGTGGGAGATGATGATGGAGGTGCAAG---GGGAGGTGGT-GAGGT 1557613 Query 225507 GCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 | |||||| || ||||| ||||||||| |||||| || || ||||| || || | Sbjct 1557612 AGTTCTCGAGCCAAGCAACGTTCTTGACGTCCAAGTGGTTGGTGGGCTCGTCAAGCAGAA 1557553 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 | || || | || || || ||| || | |||| ||||||||| ||||| || || | Sbjct 1557552 GAATATCGGGCTCCTCGAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCAG 1557493 Query 225627 ACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGT-CAAAGCCGTACTCCAGGAGCGT- 225684 | |||| | ||| | || | ||| ||| || | |||||| ||||| ||| || Sbjct 1557492 AGAGGGCGGTGATGGGGCCATCGAGCTG-GCTGCGAACGAAGCCGAACTCCTCGAGGGTG 1557434 Query 225685 --CTGGATAATGCGCTCGGGAGAGCTG---CGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739 || || ||| ||| | || | ||||| || | | | | | | Sbjct 1557433 TTCTCGACCTCAGGCTGGGGCTTGGTGACACCAGCGG--AC-TCGAGCTTCTTCATGGTC 1557377 Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799 | || || ||| || | | | | | ||||| |||||| || ||||| || ||| Sbjct 1557376 CAGCCAATGACAGTCTGCTCAGTGTCGGCGGAGTCAAGGTCGTGCTCGACGTAGACGGTC 1557317 Query 225800 CGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859 || || || | |||||| ||||| ||||| | || || || || | |||| Sbjct 1557316 TTGACCTCGGACTGCTTGGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCGCGCATCAGG 1557257 Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919 || ||||||| | |||||||| |||| || |||||| | | || ||||| | Sbjct 1557256 GTGGTCTTGCCGGAACCGTTGGGGCCGAGCAGACCGTAACGCTGACCACGCTTCAGACGA 1557197 Query 225920 AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCAC 225979 ||| | || ||| || ||||||||| |||| ||||| |||||||| ||| | |||| Sbjct 1557196 AGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCAC 1557137 Query 225980 AGGTCCTCACCCTCCTC 225996 ||||||||||||||||| Sbjct 1557136 AGGTCCTCACCCTCCTC 1557120 >seq4 Length=4775223 Score = 102 bits (112), Expect = 2e-16 Identities = 410/642 (64%), Gaps = 14/642 (2%) Strand=Plus/Minus Query 31419 GCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCA 31478 || ||| |||||| |||| ||||| | |||||| | ||||||| || ||||| Sbjct 4664620 GCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAGTCG 4664561 Query 31479 AAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGG 31538 ||||||||||| || | ||| | || |||||| | ||||||||| |||| ||| Sbjct 4664560 AAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGGGG 4664501 Query 31539 CGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTC 31598 || | |||||||| || | | ||||| || | | |||| ||| ||| ||| || Sbjct 4664500 CGGTGACGCATGTTGCTCTTTCTAGCCTCAGGCACCGGGTAGTGGTTGATGTCGATGATC 4664441 Query 31599 TTGTCGAGGTTCTTGGCCAGAATCTTCACGTGCTTGCGAAGGTCCTCAAAGTCGTAGGCA 31658 |||| | |||||| | || | || | || | | || | | |||||||| | Sbjct 4664440 TTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAAATA 4664381 Query 31659 CCGTTCTTGACGT------AGTTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTT 31712 ||||||| ||||| || || | || | | | | | | || || || | Sbjct 4664380 CCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGACGGCGACT 4664321 Query 31713 TCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATT---GCTGCCCGTGATGGTG 31769 || || | | |||||| ||||| |||||| ||||| || ||||| |||||| Sbjct 4664320 TCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGC---GAATGGTG 4664264 Query 31770 CCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATG 31829 || ||| ||| || |||| ||| | |||||||| | || | | || || Sbjct 4664263 CCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTG 4664204 Query 31830 CCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGAC-GACTTT 31888 || ||||||| || | || || || | ||| | | |||| ||| | || Sbjct 4664203 CCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGGACAGTCTCG 4664144 Query 31889 CTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGC 31948 | | |||| ||||| |||||| | || || ||||| |||||| |||| | | Sbjct 4664143 CGGC-CACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCATACAC 4664085 Query 31949 ATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTAC 32008 || | ||||| || || || |||||| | ||| | ||| | | | | ||| || Sbjct 4664084 GTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTGCTCGAC 4664025 Query 32009 TCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAG 32050 |||||||||||||||||| | ||| | ||||| ||||| Sbjct 4664024 ACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAG 4663983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622065911880