Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 378 1e-99 seq4 219 8e-52 seq10 170 4e-37 >seq6 Length=2952248 Score = 378 bits (418), Expect = 1e-99 Identities = 626/906 (69%), Gaps = 67/906 (7%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || |||||| || |||||||||||||| Sbjct 1057935 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACCTC 1057876 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 |||||||| || |||| | | |||| | |||| || || ||| || Sbjct 1057875 TCCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGACGATGAGCGCTTCTTCATCTC 1057817 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || || ||||||||||| || || ||||| || || |||||||||| | | Sbjct 1057816 GCACGTCCTCGCTTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTGGTCGAGCG 1057757 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||| ||||||||||||||||||||||| || Sbjct 1057756 CTTCAGCTCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 1057697 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| | ||| || ||||||||||| || ||| Sbjct 1057696 GGAGAACATTCACTCCGAGACCTACTCGCTCCTGATCGACACGTACATCAGCGAGCCCAA 1057637 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGA-----------------------GACGATG 42632 |||| ||| |||||||| || || || || |||| Sbjct 1057636 GCAGCGCAACTACCTGTTCAACGCTATCGACAACAGTACGTTGTACCACATATGATGATG 1057577 Query 42633 C------------------------------CCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | ||||||||||||||||||| |||||||| Sbjct 1057576 CAGAGCTTGGATCACTAACGCGTCACAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCT 1057517 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| ||||||| | | | || | | || |||| | | ||| | ||||| |||| Sbjct 1057516 CTCCGCTGGATCT-GCGACAAGAACTCTACCTTCGCTTCGCGTCTGATTGCCTTCGCCGC 1057458 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||| ||||||||| ||| | ||||| |||||||||||||||||| || || Sbjct 1057457 CGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTCTGGCTCAAGAAGCGTGG 1057398 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || |||||||| || |||||||||||||| |||||| | | |||||||| |||| | Sbjct 1057397 TCTC-ATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAGGGAATGCACA 1057339 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 |||||||||||||| ||||||||| ||| ||| | |||||| ||| | Sbjct 1057338 CCGACTTTGCCTGCCTGCTGTTCTCG---CACATCAAGTCGAAGCCCAGCCCTGAGGCCG 1057282 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 || | || || || ||||| ||||| ||||||||||||||||||||| | |||||| Sbjct 1057281 TCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCACGGATGCGCTGC 1057222 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 |||| ||||| | ||||||||| | ||||||||||| |||||||| ||| |||||||| Sbjct 1057221 CCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCG 1057162 Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 ||| || || ||| | ||| || | ||||||| || | |||||||||| Sbjct 1057161 ACCGCCTGCTGGTGGCTCTTGGCAACAAGAAG-TACTACAACGCGACCAACCCCTTCGAC 1057103 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || ||||||||||||||| | | |||||||||||||| |||||||||||||| | ||| Sbjct 1057102 TTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGAC 1057043 Query 43140 TACCAG 43145 |||||| Sbjct 1057042 TACCAG 1057037 >seq4 Length=4775223 Score = 219 bits (242), Expect = 8e-52 Identities = 495/737 (67%), Gaps = 14/737 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||||||| || || || | | ||||||| ||| |||||| ||| ||| Sbjct 4664341 GCCAAGTTGCAGACGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGG 4664282 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| || |||||||| || | || || ||| |||| ||||||| ||||||| Sbjct 4664281 TTAGAGCTGCGAATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTG 4664222 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || | ||||||||| || ||||||| || || |||| | || ||| || | | Sbjct 4664221 TACAACATGAAGGGGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTC 4664162 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| ||| ||| ||| | |||||| |||||| | ||| || |||||| Sbjct 4664161 TGCGCCCGGACAGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCG 4664102 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 ||||| ||| | || || | || || ||||| || | ||||||||||| ||| Sbjct 4664101 AACTCCTCGCCATACACGTCTGCCAGACCCGGGCATTCGTTG--GGGCACATGAGGGTCC 4664044 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||| | || ||| | || |||||| |||||||| |||||||| || | ||| | Sbjct 4664043 AAGTGCCGTTCTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACA 4663984 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | | | || ||| || |||||| | || || | || || | Sbjct 4663983 GGTCACGCGCGCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACA 4663924 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | ||| ||||||| ||||| | ||||| || | |||||| || |||||||| || |||| Sbjct 4663923 CATCGGCGTGCCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCT 4663864 Query 245166 GGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 |||| || | | | | | |||| ||| ||| || | || | | || || | Sbjct 4663863 GGTCAACGTAGCGTGCAGTG-TTGTTGTAGACGCGGAGCATGGGAATCAGACCATTGCTG 4663805 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC----AT 245280 ||||||||| || |||||| ||| || | | || ||| | ||||| | Sbjct 4663804 GTGCCGTTGGTACCGGCAATGTAGCTGCCGGTGGCAC---GGATGC-GGTGGACGTTGAG 4663749 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | || || ||| ||| ||||| | ||||||| |||||| ||||| ||||| Sbjct 4663748 ACCGATGCCTCCAGCGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 4663689 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 ||| ||||||||| |||||||| || || ||||| || | |||||| |||||||| | Sbjct 4663688 CTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAAGATGCCAGCTGCGGCTTGGGAGT 4663629 Query 245401 GCACGAGTTGAACAGAG 245417 | | ||||||||||| Sbjct 4663628 TCCGGCGTTGAACAGAG 4663612 >seq10 Length=1499934 Score = 170 bits (188), Expect = 4e-37 Identities = 265/377 (70%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||| |||||||| || ||| ||| |||||||||||||||||| |||| | ||||| Sbjct 1070881 GCCGAGGTGCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCC 1070822 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || || || |||||||| ||| || | |||| || |||| ||||||||||| | Sbjct 1070821 GCCCGTGTCCAGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCG 1070762 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGAC 244944 ||| | ||||| |||||| || ||| || || ||||||||| ||||| | Sbjct 1070761 GCGGCCGCATCCCTCGCTCTCGTACCGCTCGTAGAGCGCGCCGAACTCGG--CCCCATAG 1070704 Query 244945 C--TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTG 245002 | ||| | || ||||||||| ||||||||||| || |||| |||| | | | | Sbjct 1070703 CAATCGACGAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCGATCCGCGTCG 1070644 Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || | | ||||||| ||||| || | ||| || || | | || |||| | || | || Sbjct 1070643 ACGCGCCGCATGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGCCCGCAGC 1070584 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| ||| | | | ||| | | ||||| ||||||||| ||||||| ||| Sbjct 1070583 TCCTCCTTGCCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGC 1070524 Query 245123 TCCATGTAGACAGCGAG 245139 |||| |||||||||||| Sbjct 1070523 TCCAGGTAGACAGCGAG 1070507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338857677040