Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq6 107 2e-18 >seq4 Length=4775223 Score = 129 bits (142), Expect = 7e-25 Identities = 658/1035 (64%), Gaps = 32/1035 (3%) Strand=Plus/Minus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGG 113961 |||||||| || ||||| || ||| ||| | ||| ||||| || | ||||| || Sbjct 4664917 TTGACAACCTGGAATTCACCGGCCAGGACGCGGCG-AGAGTAGATGTTCGATGTGTAAGG 4664859 Query 113962 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCAT 114021 ||| |||||||| ||| ||| | || || || ||||| || ||||||||||| | Sbjct 4664858 CTCGAAGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGAC 4664799 Query 114022 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 114081 ||| || ||| |||| ||| | | ||| |||| ||| |||||||| | Sbjct 4664798 GAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCCA 4664739 Query 114082 GTTGAGCTTTG----TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTG 114137 | || | || ||| | |||||| || ||||||||||||| || ||||| | Sbjct 4664738 GA-GATCGGTGGGAGTCTTG---TTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAG 4664683 Query 114138 GCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCT 114194 | |||| || ||||| || || || | | || || | ||| ||| || Sbjct 4664682 GGCTACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCGATCGAG---GCAG 4664626 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 114254 |||||| || || || || ||||| || || | || | |||||||||| || Sbjct 4664625 TGAGGGCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAGCTGCTTGGCCTCGGGGG 4664566 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 | || || | | ||| | || |||| || ||||| | |||||| | ||| Sbjct 4664565 AGTCGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAA 4664506 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTAT 114371 | ||||| || | ||| || ||||| ||| ||| ||| || || || | | Sbjct 4664505 TGGGGCGGTGACGCATGTTGCTCTTTCTAGC---CTCAGGCACCGGGTAGTGGTTGATGT 4664449 Query 114372 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 114431 |||| | | | || | || || | |||| |||| || || ||||| | | | | Sbjct 4664448 CGATGATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGT 4664389 Query 114432 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 114491 | || | | |||| | | || | | ||||| || | || |||| || || | Sbjct 4664388 CGTAAATACCGTTCTCGACGTCCACGAAGGTCGGAAGAGCCAGGGAAGCCAAGTTGCAGA 4664329 Query 114492 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 114551 | | | ||||| |||||||||| | || || || | || || || || Sbjct 4664328 CGGCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGAA 4664269 Query 114552 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 114611 ||||||| | ||||| || || ||| ||| || |||||||| | |||| | | Sbjct 4664268 TGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGG 4664209 Query 114612 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACA 114670 | | || ||||| ||| | || ||||||||| | ||| | | || ||| | || ||| Sbjct 4664208 GGTTGCCAGTCTCGACTTGAGCCTCGAGAATAGCGTACCACAGCTTCTGCGCCCGG-ACA 4664150 Query 114671 GTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC- 114729 || || | | || ||||||| |||||||| |||||| || || ||||| || || Sbjct 4664149 GTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCCA 4664090 Query 114730 --CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACC 114786 |||| |||| || || || || || |||| || | ||| | ||| || Sbjct 4664089 TACACG---TCTGCCAGACCCGG-GCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTT 4664034 Query 114787 CTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACA 114846 || ||| |||||||||||||| ||||| || ||||||||||| |||| || || || Sbjct 4664033 CTGCTCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGC 4663974 Query 114847 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 114906 ||| |||| || | || || || || | || | || | | ||| ||||| Sbjct 4663973 GCGGACTTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTG 4663914 Query 114907 CCACGGTTCCAGGTA 114921 |||||| || ||||| Sbjct 4663913 CCACGGCTCAAGGTA 4663899 >seq6 Length=2952248 Score = 107 bits (118), Expect = 2e-18 Identities = 305/463 (66%), Gaps = 28/463 (6%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| ||||||||||||||||| ||||| |||| | ||| |||||||| Sbjct 1057040 GTAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAGATGTTCTCCAT 1057099 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || || ||||| | | ||| | | || ||| || | | || || Sbjct 1057100 GAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTCTTGTTGCCAAGAGCCACC--AGCAGG 1057157 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| |||| | | |||||| || | ||| Sbjct 1057158 CGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGGGCG 1057217 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||| ||| || |||| ||||||| || ||||| || || | | || Sbjct 1057218 ACGGGCAGCGCATCCGTGAGGAACTCCTTCTCGATATCCACAGCCTCG-GTA--AT---- 1057270 Query 125996 TGAATGGTGTCCAC---CCCAGGTCTATTGCGCAAAGTCTTGAAG----AGTTCCAC--- 126045 ||| | || || | |||| || | || | ||||| | || | | Sbjct 1057271 --AATCTTCTCGACGGCCTCAGGGCT---GGGCTTCGACTTGATGTGCGAGAACAGCAGG 1057325 Query 126046 --GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGT 126103 |||||| || ||| | |||||||||||||||||||| || ||||||||| || Sbjct 1057326 CAGGCAAAGTCGGTGTGCATTCCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTAAGG 1057385 Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163 || ||||||||||| |||||||| | |||||| || | || || || ||||||| Sbjct 1057386 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAAGAGCCGCTGAAGAAG 1057445 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || ||||| || ||||| |||| |||||| ||| |||| Sbjct 1057446 ATACCCTCGACGGCGGCGAAGGCAATCAGACGCGAAGCGAAGG 1057488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353383459320