Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=5700105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| | || | ||||| || || ||||||||||| || | | Sbjct 1597737 CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 1597796 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||| || || ||||||| ||||||||||| || || Sbjct 1597797 AGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1597856 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | ||||| Sbjct 1597857 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCACC 1597916 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || |||||||| ||||| Sbjct 1597917 TCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | | ||| || |||| || |||||||||||||| | Sbjct 1598229 TCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1598288 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || |||||||| || |||||||| || || || ||||| || || ||| ||| Sbjct 1598289 ATCAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTG 1598348 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 || | || ||| || || || || | || | |||||||||||||| Sbjct 1598349 TCGATGGTGTCAGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCA 1598397 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || || |||| ||||| || || || ||||||||||| | Sbjct 1598476 ACCACCGCGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 1598535 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || ||||||||||| || | || || |||||||| || ||||| Sbjct 1598536 CAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGAGG 1598595 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| || || || || || Sbjct 1598596 AATGCCTTCCTTATCCTGGATCTT 1598619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || ||||| |||| Sbjct 1597980 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTCC 1598039 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || ||||||||||| || || || || || || || Sbjct 1598040 TCCAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 1598099 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| || || | |||| ||| || || ||||| | || | || Sbjct 1598100 TGAATCTTGCTCTTGACGTTGTCGATGGTAT--CCGACGACTCAACTTCCAAGGTGATGG 1598157 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| | || || ||||| || ||||| Sbjct 1598158 TCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1598191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644618878760