Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 235 5e-57 >seq4 Length=4775223 Score = 235 bits (260), Expect = 5e-57 Identities = 495/731 (68%), Gaps = 8/731 (1%) Strand=Plus/Plus Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 ||||||||||| || || || ||| ||| || | || || ||||| || ||| | || Sbjct 4663614 CTGTTCAACGCCGGAACTCCCAAGCCGCAGCTGGCATCTTGCTTCCTCATCGAC-ATGAA 4663672 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||| |||| || || | ||||| |||||| ||| || | ||||| || Sbjct 4663673 GGAGGACAGCATCGAGGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCTAAGAC 4663732 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 ||| || || ||||| ||| |||||| | | ||||||| || |||||| ||| Sbjct 4663733 CGCTGGAGGCATCGGTCTCAACGTCCACCGCATCCGTGCCACCGGCAGCTACATTGCCGG 4663792 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 |||||| |||||| ||| || || | || |||||||| |||| ||||||| | || || Sbjct 4663793 TACCAACGGCACCAGCAATGGTCTGATTCCCATGCTCCGCGTCTACAACAACACTGCACG 4663852 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 |||||| |||||||| ||| | | | ||| | || || |||| || ||||| || Sbjct 4663853 CTACGTTGACCAGGGCGGTAACAAGCGCCCGGGCGCCTTTGCCATCTACCTTGAGCCGTG 4663912 Query 94203 GCACGCGGACGTG--CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||| || ||| ||| |||| ||||||| || ||||||||||| || || | Sbjct 4663913 GCACGCCGATGTGTTCAG--TTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGAAGTC 4663970 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | ||||| ||||||||||||||| | || ||||| || ||||| || |||||| Sbjct 4663971 CGCGCGCGTGACCTGTTCTACGCTCTCTGGATTCCCGACCTGTTCATGAAGCGTGTCGAG 4664030 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 | ||| | | |||| || | || ||||| ||||| || || ||| | ||||| | | Sbjct 4664031 CAGAACGGCACTTGGACCCTCATGTGCCCCAACGAATGCCCGGGTCTGGCAGACGTGTAT 4664090 Query 94381 GGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTT 94440 || | || || | | || | | ||||| | ||||| | | | || | Sbjct 4664091 GGCGAGGAGTTCGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGCCGTGGCCGCGAGACT 4664150 Query 94441 ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCC 94500 | || |||||||||| | || | || | || || ||||| || | ||| Sbjct 4664151 GTCCGGGCGCAGAAGCTGTGGTACGCTATTCTCGAGGCTCAAGTCGAGACTGGCAACCCC 4664210 Query 94501 TACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGAT 94559 | ||| |||| |||||| | ||| |||| |||| ||||||| || | || || || Sbjct 4664211 TTCATGTTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAATCTTGGCACCAT 4664269 Query 94560 CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGT 94619 ||||| || || ||| |||||| |||||||| ||| | || || || | || || Sbjct 4664270 TCGCAGCTCTAACCTTTGCTGCGAGATCGTCGAGTACACTGCCCCCGATGAAGTCGCCGT 4664329 Query 94620 GTGTAACCTGG 94630 || ||| ||| Sbjct 4664330 CTGCAACTTGG 4664340 Score = 107 bits (118), Expect = 2e-18 Identities = 222/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || || |||||||| || ||||| ||| ||||| ||||| |||| Sbjct 4664787 AACTCTCTGCTCGTCGCACCCATGCCTACTGCCTCGACGAGTCAGATTCTTGGTTTCAAC 4664846 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| || | ||| || ||| | ||| | || || || ||||| |||||| Sbjct 4664847 GAGTGCTTCGAGCCTTACACATCGAACATCTACTCTCGCCGCGTCCTGGCCGGTGAATTC 4664906 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGGTGTGTGGGGTGACAA 95267 | || ||||| ||||| |||| || || | || || | ||| |||| | Sbjct 4664907 CAGGTTGTCAACCCCTGGCTCCTGAAGGACTTGGTCGAC-CTCGGGCTATGGTCTGACCA 4664965 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAA-CGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 | | ||||||| | | ||| | | ||| ||| | ||| |||| || | || || | Sbjct 4664966 GATGAAGAACCGCATCAT-CGCTTCTAGCGGTTCCATTCAGCACATTCCCAACATTCCCG 4665024 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACC 95386 | ||||||||||||||||||||||| || ||||| | | |||||| || || | Sbjct 4665025 ACGACATCAAGGCGCTCTACAAGACTGTCTGGGAACTTTCTCAGCGCACCATCGTCCAGA 4665084 Query 95387 ACGCGGCCGCCCGCGGGCCCTTCAT 95411 || |||| ||| || ||||||| Sbjct 4665085 TGGCTGCCGACCGTGGTGCCTTCAT 4665109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723020662840