Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04-
26] 29 sequences; 43,283,415 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4 190 2e-43
seq10 179 4e-40
seq6 178 1e-39
seq3 114 1e-20
>seq4
Length=4775223
Score = 190 bits (210), Expect = 2e-43
Identities = 813/1261 (64%), Gaps = 33/1261 (3%)
Strand=Plus/Minus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || || || || |||| || || | | || | || ||| |||
Sbjct 4664919 GGTTGACAACCTGGAATTCACCGGCCAGGACGCGGCGAGAGTAGATGTTCGATGTGTAAG 4664860
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| || || || ||| ||| | || || |||||| || |
Sbjct 4664859 GCTCGAAGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
| | || ||| || || | |||||| ||| ||| |||||| | ||| ||||
Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267
| || | | || ||| |||||||||||||||||| | | || || ||| || |
Sbjct 4664739 AGAGATCGGTGGGAGTCTTGTTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGC 4664680
Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTC-GAGC 153326
| || ||||| || |||| | | | ||| || ||| | | || | |||
Sbjct 4664679 TACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCG-ATCGAGGCAGTGAGG 4664621
Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC--GCTTCTTCGCTCT 153384
|| ||| ||| ||||| ||| ||| || | ||||| | || || || | |
Sbjct 4664620 GCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAG--CTGCTTGGCCTCGGGGGAGT 4664563
Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
|| | |||||||| || || ||||| || || ||||| | || ||| || | ||||
Sbjct 4664562 CGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGG 4664503
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGATA 153503
| || || | |||||| || || ||| | | || ||||| ||| |||||
Sbjct 4664502 GGCGGTGACGCATGTTGCTCTTTCTAGC-CTCAGGCACCGGGTAGTGGTTGATGTCGATG 4664444
Query 153504 ATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG 153563
|| ||||| | ||| ||| | ||| | ||| | | | | || || | ||| || ||
Sbjct 4664443 ATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAA 4664384
Query 153564 GT-CATTTCGTCGACGCGTACGCA--TCGATTCACGGCAATAGACGCCAGATTACAGACG 153620
| | ||| |||||| ||| | ||| | || | || |||| || ||||||
Sbjct 4664383 ATACCGTTC-TCGACGTCCACGAAGGTCGGAAGA--GCCAGGGAAGCCAAGTTGCAGACG 4664327
Query 153621 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTT 153677
|| || |||| | | |||||| ||||||||| ||| ||||| |||||
Sbjct 4664326 GCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA--- 4664270
Query 153678 ATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTAC 153737
||| ||| | ||| | ||| ||||| ||||| ||||| ||| ||| | | |||| |
Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210
Query 153738 GGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGCTCGCAC 153796
|| ||| ||||||||||| | |||| || | | || ||| | |||||| || ||
Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGA-GAATAGCGTACCACAGCTTCTGCGCCCGGAC 4664151
Query 153797 CCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCC 153856
|| || |||||||| ||||||| ||||||| || ||| ||||| |||||
Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091
Query 153857 GTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG-TCGG 153915
|| ||| || || || || || | | || ||||| || | ||| | || || |
Sbjct 4664090 ATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTG 4664031
Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975
| | ||| || ||||||||| || || | |||||| ||||| | ||||| |||||
Sbjct 4664030 C-TCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGC 4663972
Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTG 154033
| |||||| || ||| || | || | ||| | || | | ||||||||
Sbjct 4663971 GGACTTCCTCCTTTCCGTGGTT--CTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTG 4663914
Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090
||| || |||| ||||| ||| | ||| || ||| || |||||||| || ||||
Sbjct 4663913 CCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTA 4663854
Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGG 154149
||| | | |||||| ||||||| | |||||| ||| || |||| |||||||||||
Sbjct 4663853 GCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACC-ATTGCTGGTGCCGTTGG 4663795
Query 154150 TCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGC 154209
| || | ||||||| ||| || | | || ||||| | || ||||| ||
Sbjct 4663794 TACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAG 4663735
Query 154210 CGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT 154269
|| ||| || || |||||| ||||| ||||||||| |||||||| || |
Sbjct 4663734 CGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCT 4663675
Query 154270 C 154270
|
Sbjct 4663674 C 4663674
>seq10
Length=1499934
Score = 179 bits (198), Expect = 4e-40
Identities = 324/463 (70%), Gaps = 13/463 (3%)
Strand=Plus/Minus
Query 153693 TGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752
||||| ||||| || | ||||| ||||| ||| | |||| | ||| ||||| || ||
Sbjct 1070871 TGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCCGCCCGTGTCC 1070812
Query 153753 ACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGG 153812
| || | |||||||| | | ||| ||| |||| ||| | || ||
Sbjct 1070811 AGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCGGCGGCCGCAT 1070752
Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGT-CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG 153871
|||||||||||||| |||||||| || ||| | |||||| | || ||||| ||| ||||
Sbjct 1070751 CCCTCGCTCTCGTACCGCTCGTAGAGCGCGC-CGAACTCGGCCCCATAGCAATCGACGAG 1070693
Query 153872 GCCGGGACACTGATGCGGACACATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCA 153930
||||| |||| ||| |||||||||| ||| | || || |||| |||||| ||||
Sbjct 1070692 CCCGGGGCACTCGGCCGGGCACATCAGCGTCCAG-TCGCGATCCGCGTCGACGCGCCGCA 1070634
Query 153931 TGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA-TCCTCCGCG 153989
||||||| ||||| ||||| |||||||| || || |||||| ||| |||||| |
Sbjct 1070633 TGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGCCC-GCAGCTCCTCCTTG 1070575
Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 154049
|| | | |||| ||| ||||| | | ||| |||||||||||| || || | ||||
Sbjct 1070574 CCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGCTCCAGGTAG 1070515
Query 154050 ACGGCCAGGGCACCTTTACGCTTTCCGCCCTGAT--CGACGTGGCGCACCATATTGTTGA 154107
|| || || | ||| || | | ||| | | || ||||| || | | |||||
Sbjct 1070514 ACAGCGAG---ATTGCTACTGTTGCTG--CTGCTCCCAGCGAGGCGCGCCGTGTCGTTGA 1070460
Query 154108 AGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
||||||||| |||||| | | ||| |||| || |||| |||
Sbjct 1070459 AGACGCGCAGCATGGGCACGACGCCCTTTGCCGTCCCGTCGGT 1070417
>seq6
Length=2952248
Score = 178 bits (196), Expect = 1e-39
Identities = 305/435 (70%), Gaps = 11/435 (3%)
Strand=Plus/Minus
Query 52407 GCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATT 52466
||||||||| |||||||| | || || |||| || || ||||||| | |
Sbjct 1057468 GCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTCTGGCTC 1057409
Query 52467 AAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAA 52526
|| | | || | ||||||||||| || ||| |||||| | || || || |||||
Sbjct 1057408 AAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAG 1057349
Query 52527 GGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGAC--CGAAAAATTGG 52584
||| ||||||| |||||||| ||||| | | ||| | | | |||| |
Sbjct 1057348 GGAATGCACACCGACTTTGCCTGCCTGCTGTTCT---CGCACATCAAGTCGAAGCCCAGC 1057292
Query 52585 ATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTA 52644
| | | || || || || | | ||||| |||| |||||| |||||||| | |
Sbjct 1057291 CCTGAGGC-CG-TCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCA 1057234
Query 52645 CGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCG 52704
||| |||||||| |||| ||||||||||||||||| | ||||||| |||||||||
Sbjct 1057233 CGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATCG 1057174
Query 52705 AGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGTACTTCAACGCTCG 52762
|||| || || || || ||| ||||| |||| |||| | | ||||||| ||||||
Sbjct 1057173 AGTTCGTCGCCGACCGCCTGCTGGTG--GCTCTTGGCAACAAGAAGTACTACAACGCGAC 1057116
Query 52763 CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822
||| || || || || ||| | ||||| ||||| | |||||||||||||| ||||||||
Sbjct 1057115 CAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTCGAGAA 1057056
Query 52823 GCGAGTCGGCGAGTA 52837
||| || || || ||
Sbjct 1057055 GCGCGTTGGTGACTA 1057041
>seq3
Length=5700105
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | || || || | | | |||||||| ||||||||||||||
Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || || ||||| | | || |||||||| |||||||| ||
Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | | || | |||||||| || |||||
Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| ||| | || || ||||| || || || || |||||||||||
Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | ||| || |||||| || || ||||| |
Sbjct 1597998 GACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCG 1598057
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||| |||||||| || ||||| || ||||| ||| | || | || |
Sbjct 1598058 AAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTGAC 1598116
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||| || | |||||| || || | || | || || || || || || |
Sbjct 1598117 GTTG-TCGATGGTATCCGACGACTCAACTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCT 1598175
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 1598176 TGACGAAGATCTGCAT 1598191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262220104880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |