Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 190 2e-43 seq10 179 4e-40 seq6 178 1e-39 seq3 114 1e-20 >seq4 Length=4775223 Score = 190 bits (210), Expect = 2e-43 Identities = 813/1261 (64%), Gaps = 33/1261 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || |||| || || | | || | || ||| ||| Sbjct 4664919 GGTTGACAACCTGGAATTCACCGGCCAGGACGCGGCGAGAGTAGATGTTCGATGTGTAAG 4664860 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| || || || ||| ||| | || || |||||| || | Sbjct 4664859 GCTCGAAGCACTCGTTGAAACCAAGAATCTGACTCGTCGAGGCAGTAGGCATGGGTGCGA 4664800 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | || ||| || || | |||||| ||| ||| |||||| | ||| |||| Sbjct 4664799 CGAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCGGCCTTCAGGCTATCCCAGTCCC 4664740 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 | || | | || ||| |||||||||||||||||| | | || || ||| || | Sbjct 4664739 AGAGATCGGTGGGAGTCTTGTTCCACATGTCGTACTGGAGGATACCCTGAGAGGCAGGGC 4664680 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTC-GAGC 153326 | || ||||| || |||| | | | ||| || ||| | | || | ||| Sbjct 4664679 TACCCTGGAACGTCTCATAAGGACCGTGGAGCTTGGCAAGCTCG-ATCGAGGCAGTGAGG 4664621 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC--GCTTCTTCGCTCT 153384 || ||| ||| ||||| ||| ||| || | ||||| | || || || | | Sbjct 4664620 GCAGCATGGTAAATGGTCTCGAAGATCTGGATGTTGAG--CTGCTTGGCCTCGGGGGAGT 4664563 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | |||||||| || || ||||| || || ||||| | || ||| || | |||| Sbjct 4664562 CGAAAGGCATGCGGAGAGCCAGGAAGGCATCAGCAAGACCATTGACACCCACCGCAATGG 4664503 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGATA 153503 | || || | |||||| || || ||| | | || ||||| ||| ||||| Sbjct 4664502 GGCGGTGACGCATGTTGCTCTTTCTAGC-CTCAGGCACCGGGTAGTGGTTGATGTCGATG 4664444 Query 153504 ATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG 153563 || ||||| | ||| ||| | ||| | ||| | | | | || || | ||| || || Sbjct 4664443 ATCTTGTTCAAGTTCTTCACAAGCACCTGAGTGACCTCGTGGAGCTTGTTGAAGTCGTAA 4664384 Query 153564 GT-CATTTCGTCGACGCGTACGCA--TCGATTCACGGCAATAGACGCCAGATTACAGACG 153620 | | ||| |||||| ||| | ||| | || | || |||| || |||||| Sbjct 4664383 ATACCGTTC-TCGACGTCCACGAAGGTCGGAAGA--GCCAGGGAAGCCAAGTTGCAGACG 4664327 Query 153621 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTTT 153677 || || |||| | | |||||| ||||||||| ||| ||||| ||||| Sbjct 4664326 GCGACTTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTAGAGCTGCGA--- 4664270 Query 153678 ATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTAC 153737 ||| ||| | ||| | ||| ||||| ||||| ||||| ||| ||| | | |||| | Sbjct 4664269 ATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAG 4664210 Query 153738 GGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGCTCGCAC 153796 || ||| ||||||||||| | |||| || | | || ||| | |||||| || || Sbjct 4664209 GGGTTGCCAGTCTCGACTTGAGCCTCGA-GAATAGCGTACCACAGCTTCTGCGCCCGGAC 4664151 Query 153797 CCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCC 153856 || || |||||||| ||||||| ||||||| || ||| ||||| ||||| Sbjct 4664150 AGTCTCGCGGCCACGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCCTCGCC 4664091 Query 153857 GTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG-TCGG 153915 || ||| || || || || || | | || ||||| || | ||| | || || | Sbjct 4664090 ATACACGTCTGCCAGACCCGGGCATTCGTTGGGGCACATGAGGGTCCAAGTGCCGTTCTG 4664031 Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | | ||| || ||||||||| || || | |||||| ||||| | ||||| ||||| Sbjct 4664030 C-TCGACACGCTTCATGAACAGGTCGGGAATCCAGAGAGCGTAGAACAGGTCACGCGCGC 4663972 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTG 154033 | |||||| || ||| || | || | ||| | || | | |||||||| Sbjct 4663971 GGACTTCCTCCTTTCCGTGGTT--CTTGCGAAGGTCGAGGAAACTGAACACATCGGCGTG 4663914 Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090 ||| || |||| ||||| ||| | ||| || ||| || |||||||| || |||| Sbjct 4663913 CCACGGCTCAAGGTAGATGGCAAAGGCGCCCGGGCGCTTGTTACCGCCCTGGTCAACGTA 4663854 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGG 154149 ||| | | |||||| ||||||| | |||||| ||| || |||| ||||||||||| Sbjct 4663853 GCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGAATCAGACC-ATTGCTGGTGCCGTTGG 4663795 Query 154150 TCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGC 154209 | || | ||||||| ||| || | | || ||||| | || ||||| || Sbjct 4663794 TACCGGCAATGTAGCTGCCGGTGGCACGGATGCGGTGGACGTTGAGACCGATGCCTCCAG 4663735 Query 154210 CGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT 154269 || ||| || || |||||| ||||| ||||||||| |||||||| || | Sbjct 4663734 CGGTCTTAGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCT 4663675 Query 154270 C 154270 | Sbjct 4663674 C 4663674 >seq10 Length=1499934 Score = 179 bits (198), Expect = 4e-40 Identities = 324/463 (70%), Gaps = 13/463 (3%) Strand=Plus/Minus Query 153693 TGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 ||||| ||||| || | ||||| ||||| ||| | |||| | ||| ||||| || || Sbjct 1070871 TGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTACAGCACGCTCGGCCCGCCCGTGTCC 1070812 Query 153753 ACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGG 153812 | || | |||||||| | | ||| ||| |||| ||| | || || Sbjct 1070811 AGCTGGGCCTCGACGATGGCCGTCCACAGCTCCCGCGCCTTGACCGTGCGGCGGCCGCAT 1070752 Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGT-CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG 153871 |||||||||||||| |||||||| || ||| | |||||| | || ||||| ||| |||| Sbjct 1070751 CCCTCGCTCTCGTACCGCTCGTAGAGCGCGC-CGAACTCGGCCCCATAGCAATCGACGAG 1070693 Query 153872 GCCGGGACACTGATGCGGACACATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCA 153930 ||||| |||| ||| |||||||||| ||| | || || |||| |||||| |||| Sbjct 1070692 CCCGGGGCACTCGGCCGGGCACATCAGCGTCCAG-TCGCGATCCGCGTCGACGCGCCGCA 1070634 Query 153931 TGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA-TCCTCCGCG 153989 ||||||| ||||| ||||| |||||||| || || |||||| ||| |||||| | Sbjct 1070633 TGAACAGGTCCGGTACCCACAGCGCGTAGCGCAGATCCCGCGCCC-GCAGCTCCTCCTTG 1070575 Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 154049 || | | |||| ||| ||||| | | ||| |||||||||||| || || | |||| Sbjct 1070574 CCGAAGCTGCGGCCCAGGTTGAGGAAGTCGAAGACGTCGGCGTGCCACGGCTCCAGGTAG 1070515 Query 154050 ACGGCCAGGGCACCTTTACGCTTTCCGCCCTGAT--CGACGTGGCGCACCATATTGTTGA 154107 || || || | ||| || | | ||| | | || ||||| || | | ||||| Sbjct 1070514 ACAGCGAG---ATTGCTACTGTTGCTG--CTGCTCCCAGCGAGGCGCGCCGTGTCGTTGA 1070460 Query 154108 AGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 ||||||||| |||||| | | ||| |||| || |||| ||| Sbjct 1070459 AGACGCGCAGCATGGGCACGACGCCCTTTGCCGTCCCGTCGGT 1070417 >seq6 Length=2952248 Score = 178 bits (196), Expect = 1e-39 Identities = 305/435 (70%), Gaps = 11/435 (3%) Strand=Plus/Minus Query 52407 GCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATT 52466 ||||||||| |||||||| | || || |||| || || ||||||| | | Sbjct 1057468 GCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCATCCATCTTCTGGCTC 1057409 Query 52467 AAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAA 52526 || | | || | ||||||||||| || ||| |||||| | || || || ||||| Sbjct 1057408 AAGAAGCGTGGTCTCATGCCCGGCCTTACCTTCTCGAACGAGCTCATCTCCCGTGACGAG 1057349 Query 52527 GGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGAC--CGAAAAATTGG 52584 ||| ||||||| |||||||| ||||| | | ||| | | | |||| | Sbjct 1057348 GGAATGCACACCGACTTTGCCTGCCTGCTGTTCT---CGCACATCAAGTCGAAGCCCAGC 1057292 Query 52585 ATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTA 52644 | | | || || || || | | ||||| |||| |||||| |||||||| | | Sbjct 1057291 CCTGAGGC-CG-TCGAGAAGATTATTACCGAGGCTGTGGATATCGAGAAGGAGTTCCTCA 1057234 Query 52645 CGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCG 52704 ||| |||||||| |||| ||||||||||||||||| | ||||||| ||||||||| Sbjct 1057233 CGGATGCGCTGCCCGTCGCCCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATCG 1057174 Query 52705 AGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGTACTTCAACGCTCG 52762 |||| || || || || ||| ||||| |||| |||| | | ||||||| |||||| Sbjct 1057173 AGTTCGTCGCCGACCGCCTGCTGGTG--GCTCTTGGCAACAAGAAGTACTACAACGCGAC 1057116 Query 52763 CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||| || || || || ||| | ||||| ||||| | |||||||||||||| |||||||| Sbjct 1057115 CAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACCAACTTCTTCGAGAA 1057056 Query 52823 GCGAGTCGGCGAGTA 52837 ||| || || || || Sbjct 1057055 GCGCGTTGGTGACTA 1057041 >seq3 Length=5700105 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | | |||||||| |||||||||||||| Sbjct 1597736 GCCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 1597795 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || || ||||| | | || |||||||| |||||||| || Sbjct 1597796 GAGAGTGCGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1597855 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | |||||||| || ||||| Sbjct 1597856 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCCAC 1597915 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | || || ||||| || || || || ||||||||||| Sbjct 1597916 CTCGAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1597963 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||| || || ||||| | Sbjct 1597998 GACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCCAGCTGCTTACCCGCG 1598057 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || ||||| || ||||| ||| | || | || | Sbjct 1598058 AAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTGAC 1598116 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | |||||| || || | || | || || || || || || | Sbjct 1598117 GTTG-TCGATGGTATCCGACGACTCAACTTCCAAGGTGATGGTCTTGCCGGTGAGCGTCT 1598175 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 1598176 TGACGAAGATCTGCAT 1598191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262220104880